32 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_07402	Uncharacterized protein. (513 aa)
	TCAL_07443	Uncharacterized protein; Belongs to the actin family. (418 aa)
	TCAL_01780	Calponin-homology (CH) domain-containing protein. (737 aa)
	TCAL_08422	Uncharacterized protein. (7568 aa)
	TCAL_03642	Uncharacterized protein. (722 aa)
	TCAL_11037	Uncharacterized protein. (1063 aa)
	TCAL_02084	Uncharacterized protein. (677 aa)
	TCAL_03651	ELMO domain-containing protein. (728 aa)
	TCAL_14690	MADS-box domain-containing protein. (383 aa)
	TCAL_05499	Uncharacterized protein. (1116 aa)
	TCAL_11131	Uncharacterized protein. (543 aa)
	TCAL_04361	Uncharacterized protein. (394 aa)
	TCAL_05884	Uncharacterized protein. (788 aa)
	TCAL_04124	SEC7 domain-containing protein. (1025 aa)
	TCAL_12216	Uncharacterized protein. (813 aa)
	TCAL_09293	Uncharacterized protein; Belongs to the DOCK family. (1848 aa)
	TCAL_02809	Ig-like domain-containing protein. (128 aa)
	TCAL_05450	Uncharacterized protein. (257 aa)
	TCAL_04496	Uncharacterized protein. (1349 aa)
	TCAL_12110	MADS-box domain-containing protein. (282 aa)
	TCAL_00258	Uncharacterized protein. (1383 aa)
	TCAL_13033	Uncharacterized protein. (947 aa)
	TCAL_03115	Uncharacterized protein. (1454 aa)
	TCAL_12673	Uncharacterized protein. (1044 aa)
	TCAL_11335	SEC7 domain-containing protein. (787 aa)
	TCAL_01663	SEC7 domain-containing protein. (947 aa)
	TCAL_08306	Protein kinase domain-containing protein. (521 aa)
	TCAL_00768	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	TCAL_12659	Uncharacterized protein. (268 aa)
	TCAL_08352	Uncharacterized protein. (866 aa)
	TCAL_09586	WH2 domain-containing protein. (681 aa)
	TCAL_10039	Uncharacterized protein. (549 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00258	TCAL_02084	A0A553P240	A0A553NCL5	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00258	TCAL_04361	A0A553P240	A0A553NQ06	Uncharacterized protein.	Uncharacterized protein.	0.661
TCAL_00258	TCAL_05884	A0A553P240	A0A553NQ08	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00258	TCAL_10039	A0A553P240	A0A553PNF6	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_00258	TCAL_11131	A0A553P240	A0A553NPH2	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_00258	TCAL_12216	A0A553P240	A0A553NSH7	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00768	TCAL_01663	A0A553PCH1	A0A553PA03	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.553
TCAL_00768	TCAL_01780	A0A553PCH1	A0A553N953	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Calponin-homology (CH) domain-containing protein.	0.479
TCAL_00768	TCAL_03642	A0A553PCH1	A0A553NB78	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.479
TCAL_00768	TCAL_03651	A0A553PCH1	A0A553ND48	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	ELMO domain-containing protein.	0.693
TCAL_00768	TCAL_04124	A0A553PCH1	A0A553NSG5	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	SEC7 domain-containing protein.	0.553
TCAL_00768	TCAL_04361	A0A553PCH1	A0A553NQ06	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.433
TCAL_00768	TCAL_04496	A0A553PCH1	A0A553P066	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.436
TCAL_00768	TCAL_05450	A0A553PCH1	A0A553NZI9	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.658
TCAL_00768	TCAL_05499	A0A553PCH1	A0A553NNY8	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.436
TCAL_00768	TCAL_08306	A0A553PCH1	A0A553PC58	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Protein kinase domain-containing protein.	0.556
TCAL_00768	TCAL_09293	A0A553PCH1	A0A553NYC9	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein; Belongs to the DOCK family.	0.583
TCAL_00768	TCAL_10039	A0A553PCH1	A0A553PNF6	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.545
TCAL_00768	TCAL_11037	A0A553PCH1	A0A553NC14	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.457
TCAL_00768	TCAL_11131	A0A553PCH1	A0A553NPH2	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.545