118 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_07249	Uncharacterized protein. (748 aa)
	TCAL_12258	Uncharacterized protein. (1188 aa)
	TCAL_08399	Uncharacterized protein. (490 aa)
	TCAL_10927	Uncharacterized protein. (722 aa)
	TCAL_08459	Uncharacterized protein. (1085 aa)
	TCAL_07443	Uncharacterized protein; Belongs to the actin family. (418 aa)
	TCAL_01493	Uncharacterized protein. (803 aa)
	TCAL_09147	Uncharacterized protein. (512 aa)
	TCAL_01479	Uncharacterized protein. (647 aa)
	TCAL_12263	E3 ubiquitin-protein ligase. (844 aa)
	TCAL_12266	BTB domain-containing protein. (443 aa)
	TCAL_13020	eIF2B_5 domain-containing protein. (308 aa)
	TCAL_08461	Uncharacterized protein. (5808 aa)
	TCAL_03175	Uncharacterized protein. (1803 aa)
	TCAL_08400	Uncharacterized protein. (373 aa)
	TCAL_08402	Uncharacterized protein. (428 aa)
	TCAL_05726	Uncharacterized protein. (378 aa)
	TCAL_06294	Uncharacterized protein. (474 aa)
	TCAL_00852	Uncharacterized protein; Belongs to the semaphorin family. (698 aa)
	TCAL_03897	FABD domain-containing protein. (981 aa)
	TCAL_12585	Sema domain-containing protein. (1648 aa)
	TCAL_04296	DUF3421 domain-containing protein. (476 aa)
	TCAL_10815	Uncharacterized protein. (1841 aa)
	TCAL_04300	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. (380 aa)
	TCAL_12584	Uncharacterized protein. (655 aa)
	TCAL_10896	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1198 aa)
	TCAL_11168	Uncharacterized protein. (534 aa)
	TCAL_10910	Uncharacterized protein. (1022 aa)
	TCAL_04993	Uncharacterized protein. (1614 aa)
	TCAL_06634	Uncharacterized protein. (1137 aa)
	TCAL_01743	Vang-like protein. (594 aa)
	TCAL_07586	Ig-like domain-containing protein. (190 aa)
	TCAL_07581	Uncharacterized protein. (1818 aa)
	TCAL_07587	Uncharacterized protein. (4069 aa)
	TCAL_08976	Fucosidase_C domain-containing protein; Belongs to the glycosyl hydrolase 29 family. (470 aa)
	TCAL_01723	Uncharacterized protein. (1350 aa)
	TCAL_06593	Uncharacterized protein. (196 aa)
	TCAL_10039	Uncharacterized protein. (549 aa)
	TCAL_09991	Uncharacterized protein. (1742 aa)
	TCAL_05809	Uncharacterized protein. (2909 aa)
	TCAL_07549	Uncharacterized protein. (3569 aa)
	TCAL_07561	Uncharacterized protein. (1366 aa)
	TCAL_12945	Vitellogenin domain-containing protein. (893 aa)
	TCAL_06500	BTB domain-containing protein. (519 aa)
	TCAL_09382	Ig-like domain-containing protein. (381 aa)
	TCAL_11024	ZnMc domain-containing protein. (629 aa)
	TCAL_11728	Uncharacterized protein. (224 aa)
	TCAL_17351	Ig-like domain-containing protein. (102 aa)
	TCAL_07818	Uncharacterized protein. (1035 aa)
	TCAL_02285	SAC domain-containing protein. (594 aa)
	TCAL_11131	Uncharacterized protein. (543 aa)
	TCAL_05278	Uncharacterized protein. (1645 aa)
	TCAL_04365	Uncharacterized protein. (2025 aa)
	TCAL_03760	Sulfatase domain-containing protein. (515 aa)
	TCAL_03786	Uncharacterized protein. (378 aa)
	TCAL_09398	Uncharacterized protein. (2417 aa)
	TCAL_07251	Uncharacterized protein. (678 aa)
	TCAL_06930	Uncharacterized protein. (1083 aa)
	TCAL_06934	Ig-like domain-containing protein. (240 aa)
	TCAL_08900	Sema domain-containing protein. (1934 aa)
	TCAL_06929	Uncharacterized protein. (736 aa)
	TCAL_04665	W2 domain-containing protein. (422 aa)
	TCAL_02338	Uncharacterized protein. (192 aa)
	TCAL_10021	Uncharacterized protein. (1096 aa)
	TCAL_15008	Ig-like domain-containing protein. (154 aa)
	TCAL_11614	Uncharacterized protein. (1281 aa)
	TCAL_11613	Uncharacterized protein. (1361 aa)
	TCAL_06649	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1092 aa)
	TCAL_15046	C2-set_2 domain-containing protein. (470 aa)
	TCAL_04830	Uncharacterized protein. (1994 aa)
	TCAL_01236	Uncharacterized protein. (1434 aa)
	TCAL_01234	Uncharacterized protein; Belongs to the peptidase S8 family. (957 aa)
	TCAL_02799	Uncharacterized protein. (1889 aa)
	TCAL_05282	Uncharacterized protein. (2819 aa)
	TCAL_10107	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (480 aa)
	TCAL_12498	Uncharacterized protein. (963 aa)
	TCAL_03134	Uncharacterized protein. (969 aa)
	TCAL_05303	Uncharacterized protein. (2577 aa)
	TCAL_14858	COesterase domain-containing protein. (1161 aa)
	TCAL_03930	Non-specific serine/threonine protein kinase. (1080 aa)
	TCAL_12237	Uncharacterized protein. (1425 aa)
	TCAL_00211	Uncharacterized protein. (1116 aa)
	TCAL_06731	Uncharacterized protein. (754 aa)
	TCAL_10380	Uncharacterized protein. (797 aa)
	TCAL_07890	Non-specific serine/threonine protein kinase. (571 aa)
	TCAL_01935	Uncharacterized protein. (2654 aa)
	TCAL_06974	POU domain protein. (473 aa)
	TCAL_09914	COesterase domain-containing protein. (897 aa)
	TCAL_00953	Uncharacterized protein. (1017 aa)
	TCAL_16895	Uncharacterized protein. (360 aa)
	TCAL_07402	Uncharacterized protein. (513 aa)
	TCAL_06987	Fucosidase_C domain-containing protein; Belongs to the glycosyl hydrolase 29 family. (435 aa)
	TCAL_03361	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (814 aa)
	TCAL_05026	Uncharacterized protein. (3652 aa)
	TCAL_06398	Uncharacterized protein. (873 aa)
	TCAL_12566	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (2471 aa)
	TCAL_14558	Uncharacterized protein. (587 aa)
	TCAL_04975	Uncharacterized protein. (1593 aa)
	TCAL_01637	Uncharacterized protein. (661 aa)
	TCAL_00639	Uncharacterized protein. (2463 aa)
	TCAL_03867	Uncharacterized protein. (1362 aa)
	TCAL_14766	SAC domain-containing protein. (162 aa)
	TCAL_09586	WH2 domain-containing protein. (681 aa)
	TCAL_13053	Uncharacterized protein. (1689 aa)
	TCAL_17357	SAC domain-containing protein. (326 aa)
	TCAL_00034	SAC domain-containing protein. (596 aa)
	TCAL_07423	Uncharacterized protein. (531 aa)
	TCAL_01689	Ig-like domain-containing protein. (416 aa)
	TCAL_06464	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (751 aa)
	TCAL_12741	Uncharacterized protein. (1440 aa)
	TCAL_06622	Uncharacterized protein. (910 aa)
	TCAL_06896	Uncharacterized protein. (1035 aa)
	TCAL_01716	Ig-like domain-containing protein. (506 aa)
	TCAL_01731	C2-set_2 domain-containing protein. (306 aa)
	TCAL_08987	Uncharacterized protein. (1201 aa)
	TCAL_12225	Uncharacterized protein. (1030 aa)
	TCAL_06901	P/Homo B domain-containing protein. (282 aa)
	TCAL_07165	Uncharacterized protein. (703 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00639	TCAL_01637	A0A553PDR4	A0A553PDE2	Uncharacterized protein.	Uncharacterized protein.	0.644
TCAL_00852	TCAL_01236	A0A553NBN5	A0A553NZD8	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.443
TCAL_00852	TCAL_01479	A0A553NBN5	A0A553N814	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_02338	A0A553NBN5	A0A553NX04	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_02799	A0A553NBN5	A0A553NZN7	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.431
TCAL_00852	TCAL_06593	A0A553NBN5	A0A553PN50	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_07423	A0A553NBN5	A0A553PID6	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_08399	A0A553NBN5	A0A553N6X4	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_08400	A0A553NBN5	A0A553N9A2	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_08402	A0A553NBN5	A0A553N9C8	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_08900	A0A553NBN5	A0A553NTN6	Uncharacterized protein; Belongs to the semaphorin family.	Sema domain-containing protein.	0.751
TCAL_00852	TCAL_11728	A0A553NBN5	A0A553NFX6	Uncharacterized protein; Belongs to the semaphorin family.	Uncharacterized protein.	0.406
TCAL_00852	TCAL_12585	A0A553NBN5	A0A553NCF3	Uncharacterized protein; Belongs to the semaphorin family.	Sema domain-containing protein.	0.751
TCAL_00953	TCAL_01935	A0A553P7W5	A0A553P6G4	Uncharacterized protein.	Uncharacterized protein.	0.513
TCAL_00953	TCAL_04365	A0A553P7W5	A0A553NQ31	Uncharacterized protein.	Uncharacterized protein.	0.609
TCAL_00953	TCAL_05282	A0A553P7W5	A0A553NZN9	Uncharacterized protein.	Uncharacterized protein.	0.466
TCAL_00953	TCAL_06649	A0A553P7W5	A0A553NY07	Uncharacterized protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.690
TCAL_00953	TCAL_08900	A0A553P7W5	A0A553NTN6	Uncharacterized protein.	Sema domain-containing protein.	0.453
TCAL_00953	TCAL_10896	A0A553P7W5	A0A553NET7	Uncharacterized protein.	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.	0.690
TCAL_00953	TCAL_12585	A0A553P7W5	A0A553NCF3	Uncharacterized protein.	Sema domain-containing protein.	0.453