73 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_15008	Ig-like domain-containing protein. (154 aa)
	TCAL_08399	Uncharacterized protein. (490 aa)
	TCAL_10923	Uncharacterized protein. (1021 aa)
	TCAL_01479	Uncharacterized protein. (647 aa)
	TCAL_01474	BHLH domain-containing protein. (425 aa)
	TCAL_08400	Uncharacterized protein. (373 aa)
	TCAL_08402	Uncharacterized protein. (428 aa)
	TCAL_12828	Uncharacterized protein. (524 aa)
	TCAL_12793	WD_REPEATS_REGION domain-containing protein. (1202 aa)
	TCAL_13030	Endostatin domain-containing protein. (596 aa)
	TCAL_03897	FABD domain-containing protein. (981 aa)
	TCAL_12580	Uncharacterized protein. (259 aa)
	TCAL_12795	Endostatin domain-containing protein. (75 aa)
	TCAL_12827	Uncharacterized protein. (497 aa)
	TCAL_11024	ZnMc domain-containing protein. (629 aa)
	TCAL_11728	Uncharacterized protein. (224 aa)
	TCAL_09076	LRRCT domain-containing protein. (777 aa)
	TCAL_05244	Stork_head domain-containing protein. (859 aa)
	TCAL_04365	Uncharacterized protein. (2025 aa)
	TCAL_05163	Uncharacterized protein. (607 aa)
	TCAL_03760	Sulfatase domain-containing protein. (515 aa)
	TCAL_09353	Uncharacterized protein. (1032 aa)
	TCAL_10233	Uncharacterized protein. (991 aa)
	TCAL_06930	Uncharacterized protein. (1083 aa)
	TCAL_11021	Uncharacterized protein. (1084 aa)
	TCAL_07248	Homeobox domain-containing protein. (424 aa)
	TCAL_06929	Uncharacterized protein. (736 aa)
	TCAL_02338	Uncharacterized protein. (192 aa)
	TCAL_10021	Uncharacterized protein. (1096 aa)
	TCAL_02853	Uncharacterized protein. (553 aa)
	TCAL_02856	Uncharacterized protein. (439 aa)
	TCAL_02858	Uncharacterized protein. (641 aa)
	TCAL_11614	Uncharacterized protein. (1281 aa)
	TCAL_11613	Uncharacterized protein. (1361 aa)
	TCAL_01236	Uncharacterized protein. (1434 aa)
	TCAL_05282	Uncharacterized protein. (2819 aa)
	TCAL_12498	Uncharacterized protein. (963 aa)
	TCAL_12237	Uncharacterized protein. (1425 aa)
	TCAL_03162	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (209 aa)
	TCAL_00211	Uncharacterized protein. (1116 aa)
	TCAL_01935	Uncharacterized protein. (2654 aa)
	TCAL_01863	Spaetzle domain-containing protein. (409 aa)
	TCAL_11681	Uncharacterized protein. (1571 aa)
	TCAL_00953	Uncharacterized protein. (1017 aa)
	TCAL_06400	Uncharacterized protein; Belongs to the cytochrome P450 family. (450 aa)
	TCAL_06390	PID domain-containing protein. (1600 aa)
	TCAL_04535	Uncharacterized protein. (469 aa)
	TCAL_12660	Uncharacterized protein. (423 aa)
	TCAL_04520	Uncharacterized protein. (1259 aa)
	TCAL_01637	Uncharacterized protein. (661 aa)
	TCAL_01631	PDZ domain-containing protein. (332 aa)
	TCAL_17367	PDZ domain-containing protein. (168 aa)
	TCAL_11864	Uncharacterized protein. (2009 aa)
	TCAL_07423	Uncharacterized protein. (531 aa)
	TCAL_11900	Uncharacterized protein. (131 aa)
	TCAL_12045	Uncharacterized protein. (341 aa)
	TCAL_13120	Ig-like domain-containing protein. (272 aa)
	TCAL_12422	Ig-like domain-containing protein. (665 aa)
	TCAL_01731	C2-set_2 domain-containing protein. (306 aa)
	TCAL_08518	Uncharacterized protein. (461 aa)
	TCAL_13275	Ig-like domain-containing protein. (272 aa)
	TCAL_12738	Ig-like domain-containing protein. (276 aa)
	TCAL_16697	Uncharacterized protein. (190 aa)
	TCAL_09465	Ig-like domain-containing protein. (334 aa)
	TCAL_12186	Ig-like domain-containing protein. (296 aa)
	TCAL_06593	Uncharacterized protein. (196 aa)
	TCAL_07549	Uncharacterized protein. (3569 aa)
	TCAL_11366	Cyclin-dependent kinase 5 activator. (400 aa)
	TCAL_07561	Uncharacterized protein. (1366 aa)
	TCAL_16787	Spaetzle domain-containing protein. (771 aa)
	TCAL_13263	Uncharacterized protein. (391 aa)
	TCAL_13247	Spaetzle domain-containing protein. (371 aa)
	TCAL_11845	Spaetzle domain-containing protein. (884 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00953	TCAL_01935	A0A553P7W5	A0A553P6G4	Uncharacterized protein.	Uncharacterized protein.	0.513
TCAL_00953	TCAL_03162	A0A553P7W5	A0A553P3J2	Uncharacterized protein.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.460
TCAL_00953	TCAL_04365	A0A553P7W5	A0A553NQ31	Uncharacterized protein.	Uncharacterized protein.	0.609
TCAL_00953	TCAL_05282	A0A553P7W5	A0A553NZN9	Uncharacterized protein.	Uncharacterized protein.	0.466
TCAL_01236	TCAL_07561	A0A553NZD8	A0A553PQU2	Uncharacterized protein.	Uncharacterized protein.	0.415
TCAL_01236	TCAL_11681	A0A553NZD8	A0A553P7N6	Uncharacterized protein.	Uncharacterized protein.	0.449
TCAL_01479	TCAL_03897	A0A553N814	A0A553NBR6	Uncharacterized protein.	FABD domain-containing protein.	0.540
TCAL_01479	TCAL_07561	A0A553N814	A0A553PQU2	Uncharacterized protein.	Uncharacterized protein.	0.553
TCAL_01637	TCAL_03162	A0A553PDE2	A0A553P3J2	Uncharacterized protein.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.405
TCAL_01637	TCAL_05163	A0A553PDE2	A0A553NQV4	Uncharacterized protein.	Uncharacterized protein.	0.473
TCAL_01637	TCAL_09076	A0A553PDE2	A0A553NPS0	Uncharacterized protein.	LRRCT domain-containing protein.	0.473
TCAL_01637	TCAL_09353	A0A553PDE2	A0A553NS96	Uncharacterized protein.	Uncharacterized protein.	0.831
TCAL_01637	TCAL_10233	A0A553PDE2	A0A553NSI6	Uncharacterized protein.	Uncharacterized protein.	0.831
TCAL_01637	TCAL_10923	A0A553PDE2	A0A553N701	Uncharacterized protein.	Uncharacterized protein.	0.473
TCAL_01637	TCAL_11021	A0A553PDE2	A0A553NTX1	Uncharacterized protein.	Uncharacterized protein.	0.480
TCAL_01731	TCAL_04535	A0A553PL03	A0A553PAW2	C2-set_2 domain-containing protein.	Uncharacterized protein.	0.553
TCAL_01731	TCAL_06400	A0A553PL03	A0A553PAJ8	C2-set_2 domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.553
TCAL_01935	TCAL_00953	A0A553P6G4	A0A553P7W5	Uncharacterized protein.	Uncharacterized protein.	0.513
TCAL_01935	TCAL_03162	A0A553P6G4	A0A553P3J2	Uncharacterized protein.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.460
TCAL_01935	TCAL_04365	A0A553P6G4	A0A553NQ31	Uncharacterized protein.	Uncharacterized protein.	0.609