25 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_10963	Uncharacterized protein. (986 aa)
	TCAL_13263	Uncharacterized protein. (391 aa)
	TCAL_06304	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. (278 aa)
	TCAL_06217	Uncharacterized protein. (349 aa)
	TCAL_11116	Uncharacterized protein. (369 aa)
	TCAL_15070	Uncharacterized protein. (56 aa)
	TCAL_08221	Uncharacterized protein. (776 aa)
	TCAL_11259	Uncharacterized protein. (369 aa)
	TCAL_14964	Uncharacterized protein. (188 aa)
	TCAL_04206	Uncharacterized protein. (294 aa)
	TCAL_15768	Uncharacterized protein. (313 aa)
	TCAL_06093	Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (549 aa)
	TCAL_10672	Uncharacterized protein. (399 aa)
	TCAL_16512	Uncharacterized protein. (253 aa)
	TCAL_00538	Uncharacterized protein. (359 aa)
	TCAL_00539	Uncharacterized protein. (362 aa)
	TCAL_06344	Uncharacterized protein. (354 aa)
	TCAL_09750	Protein kinase domain-containing protein. (546 aa)
	TCAL_04520	Uncharacterized protein. (1259 aa)
	TCAL_04975	Uncharacterized protein. (1593 aa)
	TCAL_03504	Uncharacterized protein. (758 aa)
	TCAL_03505	Uncharacterized protein. (617 aa)
	TCAL_00107	KH domain-containing protein. (364 aa)
	TCAL_12444	Uncharacterized protein. (356 aa)
	TCAL_05122	Uncharacterized protein. (368 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00538	TCAL_03504	A0A553PAY3	A0A553PGL7	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_00538	TCAL_03505	A0A553PAY3	A0A553PGL8	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_00539	TCAL_03504	A0A553PAZ6	A0A553PGL7	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_00539	TCAL_03505	A0A553PAZ6	A0A553PGL8	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_00538	A0A553PGL7	A0A553PAY3	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_00539	A0A553PGL7	A0A553PAZ6	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_03505	A0A553PGL7	A0A553PGL8	Uncharacterized protein.	Uncharacterized protein.	0.852
TCAL_03504	TCAL_04206	A0A553PGL7	A0A553N6C1	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_05122	A0A553PGL7	A0A553PQA1	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_06344	A0A553PGL7	A0A553PCH4	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_11116	A0A553PGL7	A0A553NPQ9	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_11259	A0A553PGL7	A0A553NBE3	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03504	TCAL_12444	A0A553PGL7	A0A553PKC1	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03505	TCAL_00538	A0A553PGL8	A0A553PAY3	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03505	TCAL_00539	A0A553PGL8	A0A553PAZ6	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03505	TCAL_03504	A0A553PGL8	A0A553PGL7	Uncharacterized protein.	Uncharacterized protein.	0.852
TCAL_03505	TCAL_04206	A0A553PGL8	A0A553N6C1	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03505	TCAL_05122	A0A553PGL8	A0A553PQA1	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03505	TCAL_06344	A0A553PGL8	A0A553PCH4	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_03505	TCAL_11116	A0A553PGL8	A0A553NPQ9	Uncharacterized protein.	Uncharacterized protein.	0.665