34 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05892	Cytochrome b561 domain-containing protein. (240 aa)
	TCAL_06002	Cytochrome b561 domain-containing protein. (507 aa)
	TCAL_06310	Uncharacterized protein. (181 aa)
	CYC1	Cytochrome c1. (276 aa)
	TCAL_03710	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (227 aa)
	TCAL_06478	Uncharacterized protein; Belongs to the complex I 49 kDa subunit family. (474 aa)
	TCAL_12557	DOMON domain-containing protein. (198 aa)
	TCAL_07308	Uncharacterized protein. (196 aa)
	TCAL_00157	Uncharacterized protein. (126 aa)
	TCAL_03847	Uncharacterized protein. (92 aa)
	TCAL_06393	Uncharacterized protein. (160 aa)
	TCAL_07035	Uncharacterized protein. (90 aa)
	TCAL_08370	Uncharacterized protein. (244 aa)
	TCAL_05462	Uncharacterized protein. (946 aa)
	TCAL_00971	Uncharacterized protein. (88 aa)
	TCAL_11262	Cytochrome b561 domain-containing protein. (428 aa)
	TCAL_02370	zf-CHCC domain-containing protein. (121 aa)
	TCAL_17333	Uncharacterized protein. (91 aa)
	TCAL_05445	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (139 aa)
	TCAL_03255	Uncharacterized protein. (1014 aa)
	TCAL_13329	Uncharacterized protein. (174 aa)
	TCAL_09341	Uncharacterized protein. (814 aa)
	TCAL_06837	Uncharacterized protein; Belongs to the complex I LYR family. (124 aa)
	TCAL_09394	Uncharacterized protein. (1243 aa)
	TCAL_07482	Reelin domain-containing protein. (268 aa)
	TCAL_05872	Uncharacterized protein. (269 aa)
	TCAL_00848	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (225 aa)
	TCAL_00849	Uncharacterized protein. (193 aa)
	TCAL_00782	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family. (285 aa)
	TCAL_16654	Uncharacterized protein. (133 aa)
	TCAL_14175	Uncharacterized protein. (120 aa)
	TCAL_00348	L51_S25_CI-B8 domain-containing protein. (92 aa)
	TCAL_09098	Uncharacterized protein. (120 aa)
	TCAL_04175	Uncharacterized protein. (186 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYC1	TCAL_00157	Q6VBC0	A0A553PG97	Cytochrome c1.	Uncharacterized protein.	0.991
CYC1	TCAL_00348	Q6VBC0	A0A553NC36	Cytochrome c1.	L51_S25_CI-B8 domain-containing protein.	0.988
CYC1	TCAL_00782	Q6VBC0	A0A553NEZ1	Cytochrome c1.	SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.	0.706
CYC1	TCAL_00848	Q6VBC0	A0A553NFC5	Cytochrome c1.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.999
CYC1	TCAL_00849	Q6VBC0	A0A553NFA6	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_00971	Q6VBC0	A0A553P7T2	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_02370	Q6VBC0	A0A553P0F0	Cytochrome c1.	zf-CHCC domain-containing protein.	0.993
CYC1	TCAL_03710	Q6VBC0	Q6VBC4	Cytochrome c1.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
CYC1	TCAL_03847	Q6VBC0	A0A553PFD8	Cytochrome c1.	Uncharacterized protein.	0.913
CYC1	TCAL_04175	Q6VBC0	A0A553N837	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_05445	Q6VBC0	A0A553NXF8	Cytochrome c1.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.963
CYC1	TCAL_05872	Q6VBC0	A0A553NNU2	Cytochrome c1.	Uncharacterized protein.	0.938
CYC1	TCAL_06393	Q6VBC0	A0A553PAV5	Cytochrome c1.	Uncharacterized protein.	0.995
CYC1	TCAL_06478	Q6VBC0	A0A553PLL3	Cytochrome c1.	Uncharacterized protein; Belongs to the complex I 49 kDa subunit family.	0.999
CYC1	TCAL_06837	Q6VBC0	A0A553NTY6	Cytochrome c1.	Uncharacterized protein; Belongs to the complex I LYR family.	0.990
CYC1	TCAL_07035	Q6VBC0	A0A553PAM6	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_07308	Q6VBC0	A0A553PH04	Cytochrome c1.	Uncharacterized protein.	0.970
CYC1	TCAL_08370	Q6VBC0	A0A553PAI0	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_09098	Q6VBC0	A0A553N8C3	Cytochrome c1.	Uncharacterized protein.	0.995
CYC1	TCAL_13329	Q6VBC0	A0A553NUX0	Cytochrome c1.	Uncharacterized protein.	0.974