(37 nodes) Sleep network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_12579	Uncharacterized protein; Belongs to the heat shock protein 70 family. (673 aa)
	TCAL_02947	Cyclic nucleotide-binding domain-containing protein. (1154 aa)
	TCAL_16961	Uncharacterized protein. (151 aa)
	TCAL_08480	Uncharacterized protein. (144 aa)
	TCAL_13100	Uncharacterized protein. (173 aa)
	TCAL_05241	BTB domain-containing protein. (243 aa)
	TCAL_11977	Uncharacterized protein. (307 aa)
	TCAL_13515	Uncharacterized protein. (164 aa)
	TCAL_10010	Nipped-B protein. (2209 aa)
	TCAL_17311	Protein kinase domain-containing protein. (1126 aa)
	TCAL_04327	Uncharacterized protein. (143 aa)
	TCAL_10770	Serine/threonine-protein phosphatase. (502 aa)
	TCAL_05905	Aldo_ket_red domain-containing protein. (389 aa)
	TCAL_15448	Uncharacterized protein. (142 aa)
	TCAL_01870	Uncharacterized protein. (164 aa)
	TCAL_16281	Uncharacterized protein. (173 aa)
	TCAL_08406	Elp3 domain-containing protein. (362 aa)
	TCAL_05796	Uncharacterized protein. (308 aa)
	TCAL_16064	Uncharacterized protein. (170 aa)
	TCAL_12188	SERTA domain-containing protein. (613 aa)
	TCAL_12739	MADS-box domain-containing protein. (333 aa)
	TCAL_06891	Uncharacterized protein. (283 aa)
	TCAL_14772	Uncharacterized protein. (210 aa)
	TCAL_09754	Uncharacterized protein. (2803 aa)
	TCAL_09850	Uncharacterized protein. (79 aa)
	TCAL_09851	Uncharacterized protein. (241 aa)
	TCAL_06398	Uncharacterized protein. (873 aa)
	TCAL_00753	Uncharacterized protein; Belongs to the heat shock protein 70 family. (563 aa)
	TCAL_06696	CULLIN_2 domain-containing protein; Belongs to the cullin family. (770 aa)
	TCAL_00938	BH4_AAA_HYDROXYL_2 domain-containing protein. (455 aa)
	TCAL_11678	Uncharacterized protein. (128 aa)
	TCAL_00896	Uncharacterized protein. (310 aa)
	TCAL_10171	BTB domain-containing protein; Belongs to the potassium channel family. (440 aa)
	TCAL_04384	Aa_trans domain-containing protein. (463 aa)
	TCAL_02651	Uncharacterized protein. (1163 aa)
	TCAL_00359	Uncharacterized protein. (278 aa)
	TCAL_16565	BZIP domain-containing protein. (414 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00359	TCAL_10770	A0A553NBT4	A0A553PTR5	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.401
TCAL_00359	TCAL_12739	A0A553NBT4	A0A553PM22	Uncharacterized protein.	MADS-box domain-containing protein.	0.472
TCAL_00359	TCAL_15448	A0A553NBT4	A0A553PSZ4	Uncharacterized protein.	Uncharacterized protein.	0.401
TCAL_00359	TCAL_16565	A0A553NBT4	A0A553NDZ4	Uncharacterized protein.	BZIP domain-containing protein.	0.777
TCAL_00896	TCAL_01870	A0A553P6H6	A0A553P5R1	Uncharacterized protein.	Uncharacterized protein.	0.762
TCAL_00896	TCAL_11678	A0A553P6H6	A0A553P732	Uncharacterized protein.	Uncharacterized protein.	0.466
TCAL_01870	TCAL_00896	A0A553P5R1	A0A553P6H6	Uncharacterized protein.	Uncharacterized protein.	0.762
TCAL_02947	TCAL_05905	A0A553NQG5	A0A553PPI6	Cyclic nucleotide-binding domain-containing protein.	Aldo_ket_red domain-containing protein.	0.511
TCAL_05241	TCAL_06696	A0A553NTX8	A0A553P7T5	BTB domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.940
TCAL_05796	TCAL_10770	A0A553PNZ2	A0A553PTR5	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.401
TCAL_05796	TCAL_12739	A0A553PNZ2	A0A553PM22	Uncharacterized protein.	MADS-box domain-containing protein.	0.472
TCAL_05796	TCAL_15448	A0A553PNZ2	A0A553PSZ4	Uncharacterized protein.	Uncharacterized protein.	0.401
TCAL_05796	TCAL_16565	A0A553PNZ2	A0A553NDZ4	Uncharacterized protein.	BZIP domain-containing protein.	0.777
TCAL_05905	TCAL_02947	A0A553PPI6	A0A553NQG5	Aldo_ket_red domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.511
TCAL_05905	TCAL_10171	A0A553PPI6	A0A553P5V7	Aldo_ket_red domain-containing protein.	BTB domain-containing protein; Belongs to the potassium channel family.	0.967
TCAL_06696	TCAL_05241	A0A553P7T5	A0A553NTX8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	BTB domain-containing protein.	0.940
TCAL_06696	TCAL_09754	A0A553P7T5	A0A553PDZ0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.550
TCAL_06696	TCAL_10770	A0A553P7T5	A0A553PTR5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Serine/threonine-protein phosphatase.	0.517
TCAL_06696	TCAL_15448	A0A553P7T5	A0A553PSZ4	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.517
TCAL_08406	TCAL_16565	A0A553N965	A0A553NDZ4	Elp3 domain-containing protein.	BZIP domain-containing protein.	0.432