(21 nodes) Intraciliary transport particle network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_04406	Uncharacterized protein. (132 aa)
	TCAL_05699	Protein kinase domain-containing protein. (1225 aa)
	TCAL_06681	WD_REPEATS_REGION domain-containing protein. (786 aa)
	TCAL_09521	Uncharacterized protein. (223 aa)
	TCAL_10774	ANAPC4_WD40 domain-containing protein. (1468 aa)
	TCAL_09072	Uncharacterized protein. (130 aa)
	TCAL_05644	WD_REPEATS_REGION domain-containing protein. (1370 aa)
	TCAL_01250	Uncharacterized protein. (1399 aa)
	TCAL_01252	Uncharacterized protein. (1326 aa)
	TCAL_16434	Uncharacterized protein. (190 aa)
	TCAL_13153	Uncharacterized protein. (1150 aa)
	TCAL_03146	Uncharacterized protein. (406 aa)
	TCAL_01642	Uncharacterized protein. (557 aa)
	TCAL_09757	Uncharacterized protein. (367 aa)
	TCAL_13008	IFT81_CH domain-containing protein. (742 aa)
	TCAL_06462	Uncharacterized protein. (231 aa)
	TCAL_06454	Uncharacterized protein. (862 aa)
	TCAL_05893	WD_REPEATS_REGION domain-containing protein. (1191 aa)
	TCAL_07366	Uncharacterized protein. (321 aa)
	TCAL_10174	ABC_transp_aux domain-containing protein. (437 aa)
	TCAL_08853	Uncharacterized protein. (611 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01250	TCAL_01252	A0A553NZS8	A0A553NZT7	Uncharacterized protein.	Uncharacterized protein.	0.963
TCAL_01250	TCAL_01642	A0A553NZS8	A0A553PA82	Uncharacterized protein.	Uncharacterized protein.	0.809
TCAL_01250	TCAL_03146	A0A553NZS8	A0A553P3M7	Uncharacterized protein.	Uncharacterized protein.	0.817
TCAL_01250	TCAL_04406	A0A553NZS8	A0A553N7E4	Uncharacterized protein.	Uncharacterized protein.	0.633
TCAL_01250	TCAL_05644	A0A553NZS8	A0A553NUS2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
TCAL_01250	TCAL_05699	A0A553NZS8	A0A553N7Z2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.645
TCAL_01250	TCAL_05893	A0A553NZS8	A0A553PN77	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
TCAL_01250	TCAL_06454	A0A553NZS8	A0A553PLP6	Uncharacterized protein.	Uncharacterized protein.	0.849
TCAL_01250	TCAL_06462	A0A553NZS8	A0A553PJY2	Uncharacterized protein.	Uncharacterized protein.	0.986
TCAL_01250	TCAL_06681	A0A553NZS8	A0A553N989	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.905
TCAL_01250	TCAL_07366	A0A553NZS8	A0A553PQ17	Uncharacterized protein.	Uncharacterized protein.	0.786
TCAL_01250	TCAL_08853	A0A553NZS8	A0A553PTI3	Uncharacterized protein.	Uncharacterized protein.	0.791
TCAL_01250	TCAL_09072	A0A553NZS8	A0A553NQ42	Uncharacterized protein.	Uncharacterized protein.	0.633
TCAL_01250	TCAL_09521	A0A553NZS8	A0A553N9C1	Uncharacterized protein.	Uncharacterized protein.	0.491
TCAL_01250	TCAL_09757	A0A553NZS8	A0A553PC75	Uncharacterized protein.	Uncharacterized protein.	0.534
TCAL_01250	TCAL_10174	A0A553NZS8	A0A553PRL4	Uncharacterized protein.	ABC_transp_aux domain-containing protein.	0.809
TCAL_01250	TCAL_10774	A0A553NZS8	A0A553NF88	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.993
TCAL_01250	TCAL_13008	A0A553NZS8	A0A553PDX5	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.788
TCAL_01250	TCAL_13153	A0A553NZS8	A0A553P3C2	Uncharacterized protein.	Uncharacterized protein.	0.814
TCAL_01250	TCAL_16434	A0A553NZS8	A0A553P0C4	Uncharacterized protein.	Uncharacterized protein.	0.772