(23 nodes) Protein targeting to ER network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_07448	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (97 aa)
	TCAL_08331	Uncharacterized protein. (253 aa)
	TCAL_01714	Uncharacterized protein. (184 aa)
	TCAL_13665	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (584 aa)
	TCAL_10530	Uncharacterized protein. (170 aa)
	TCAL_01305	TPR_REGION domain-containing protein. (193 aa)
	TCAL_11820	Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (597 aa)
	TCAL_01954	Signal peptidase complex subunit 3. (179 aa)
	TCAL_11187	Uncharacterized protein. (126 aa)
	TCAL_14889	SRP9-21 domain-containing protein. (85 aa)
	TCAL_10690	RING-type domain-containing protein. (910 aa)
	TCAL_04477	TPR_REGION domain-containing protein. (200 aa)
	TCAL_01164	Plug_translocon domain-containing protein. (473 aa)
	TCAL_05423	TPR_REGION domain-containing protein. (320 aa)
	TCAL_05616	Uncharacterized protein. (257 aa)
	TCAL_04689	Uncharacterized protein. (68 aa)
	TCAL_06202	Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family. (657 aa)
	TCAL_05358	Uncharacterized protein. (335 aa)
	TCAL_10812	J domain-containing protein. (776 aa)
	TCAL_06273	Uncharacterized protein. (561 aa)
	TCAL_07282	Uncharacterized protein. (196 aa)
	TCAL_07147	Uncharacterized protein. (94 aa)
	TCAL_11960	Uncharacterized protein. (460 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01164	TCAL_01714	A0A553NY53	A0A553PKU6	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.865
TCAL_01164	TCAL_04689	A0A553NY53	A0A553NUN9	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.999
TCAL_01164	TCAL_05358	A0A553NY53	A0A553NPU0	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.988
TCAL_01164	TCAL_06202	A0A553NY53	A0A553NTG0	Plug_translocon domain-containing protein.	Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.	0.526
TCAL_01164	TCAL_06273	A0A553NY53	A0A553NF75	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.978
TCAL_01164	TCAL_07282	A0A553NY53	A0A553NEB7	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.663
TCAL_01164	TCAL_07448	A0A553NY53	A0A553N7G2	Plug_translocon domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.999
TCAL_01164	TCAL_08331	A0A553NY53	A0A553PNB6	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.731
TCAL_01164	TCAL_10530	A0A553NY53	A0A553PG76	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.617
TCAL_01164	TCAL_10812	A0A553NY53	A0A553NFG3	Plug_translocon domain-containing protein.	J domain-containing protein.	0.997
TCAL_01164	TCAL_11187	A0A553NY53	A0A553P4M3	Plug_translocon domain-containing protein.	Uncharacterized protein.	0.478
TCAL_01164	TCAL_11820	A0A553NY53	A0A553P8D5	Plug_translocon domain-containing protein.	Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family.	0.521
TCAL_01305	TCAL_07448	A0A553P9U5	A0A553N7G2	TPR_REGION domain-containing protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.691
TCAL_01714	TCAL_01164	A0A553PKU6	A0A553NY53	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.865
TCAL_01714	TCAL_01954	A0A553PKU6	A0A553P699	Uncharacterized protein.	Signal peptidase complex subunit 3.	0.408
TCAL_01714	TCAL_04689	A0A553PKU6	A0A553NUN9	Uncharacterized protein.	Uncharacterized protein.	0.742
TCAL_01714	TCAL_07282	A0A553PKU6	A0A553NEB7	Uncharacterized protein.	Uncharacterized protein.	0.724
TCAL_01714	TCAL_07448	A0A553PKU6	A0A553N7G2	Uncharacterized protein.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.986
TCAL_01714	TCAL_10812	A0A553PKU6	A0A553NFG3	Uncharacterized protein.	J domain-containing protein.	0.588
TCAL_01954	TCAL_01714	A0A553P699	A0A553PKU6	Signal peptidase complex subunit 3.	Uncharacterized protein.	0.408