(14 nodes) Dynein heavy chain binding network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05969	WD_REPEATS_REGION domain-containing protein. (748 aa)
	TCAL_05666	WD_REPEATS_REGION domain-containing protein. (710 aa)
	TCAL_01952	WD_REPEATS_REGION domain-containing protein. (511 aa)
	TCAL_12014	Uncharacterized protein. (337 aa)
	TCAL_12894	Uncharacterized protein. (322 aa)
	TCAL_09132	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (531 aa)
	TCAL_07584	Uncharacterized protein. (646 aa)
	TCAL_09457	Uncharacterized protein. (259 aa)
	TCAL_06882	Uncharacterized protein. (320 aa)
	TCAL_14747	Uncharacterized protein. (418 aa)
	TCAL_15981	Uncharacterized protein. (948 aa)
	TCAL_06341	Uncharacterized protein. (189 aa)
	TCAL_00686	Uncharacterized protein. (131 aa)
	TCAL_00687	Uncharacterized protein. (663 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00686	TCAL_06882	A0A553PC87	A0A553PIC6	Uncharacterized protein.	Uncharacterized protein.	0.703
TCAL_00686	TCAL_09132	A0A553PC87	A0A553N6H3	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.728
TCAL_00686	TCAL_09457	A0A553PC87	A0A553PK60	Uncharacterized protein.	Uncharacterized protein.	0.542
TCAL_00687	TCAL_06882	A0A553PC62	A0A553PIC6	Uncharacterized protein.	Uncharacterized protein.	0.703
TCAL_00687	TCAL_09132	A0A553PC62	A0A553N6H3	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.728
TCAL_00687	TCAL_09457	A0A553PC62	A0A553PK60	Uncharacterized protein.	Uncharacterized protein.	0.542
TCAL_01952	TCAL_06882	A0A553P674	A0A553PIC6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.953
TCAL_01952	TCAL_07584	A0A553P674	A0A553PM90	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.984
TCAL_01952	TCAL_09132	A0A553P674	A0A553N6H3	WD_REPEATS_REGION domain-containing protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.728
TCAL_01952	TCAL_09457	A0A553P674	A0A553PK60	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.500
TCAL_05666	TCAL_06882	A0A553PAV9	A0A553PIC6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.906
TCAL_05666	TCAL_09132	A0A553PAV9	A0A553N6H3	WD_REPEATS_REGION domain-containing protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.995
TCAL_05666	TCAL_09457	A0A553PAV9	A0A553PK60	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.500
TCAL_05969	TCAL_06341	A0A553NPW1	A0A553PCG9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.548
TCAL_05969	TCAL_06882	A0A553NPW1	A0A553PIC6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.703
TCAL_05969	TCAL_09132	A0A553NPW1	A0A553N6H3	WD_REPEATS_REGION domain-containing protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.728
TCAL_05969	TCAL_09457	A0A553NPW1	A0A553PK60	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.744
TCAL_05969	TCAL_12014	A0A553NPW1	A0A553NUA1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.513
TCAL_05969	TCAL_12894	A0A553NPW1	A0A553NTR1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.570
TCAL_06341	TCAL_05969	A0A553PCG9	A0A553NPW1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.548