20 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05373	Uncharacterized protein. (5063 aa)
	TCAL_03725	Uncharacterized protein. (977 aa)
	TCAL_05192	Uncharacterized protein. (1043 aa)
	TCAL_06645	Uncharacterized protein. (1069 aa)
	TCAL_05282	Uncharacterized protein. (2819 aa)
	TCAL_03142	Uncharacterized protein; Belongs to the Stoned B family. (889 aa)
	TCAL_12113	Uncharacterized protein. (1560 aa)
	TCAL_00171	Uncharacterized protein. (1151 aa)
	TCAL_12237	Uncharacterized protein. (1425 aa)
	TCAL_05061	Uncharacterized protein. (1199 aa)
	TCAL_05026	Uncharacterized protein. (3652 aa)
	TCAL_01671	Uncharacterized protein. (1046 aa)
	TCAL_00729	Nicotinamide-nucleotide adenylyltransferase. (239 aa)
	TCAL_04528	Uncharacterized protein. (1418 aa)
	TCAL_07007	Uncharacterized protein. (904 aa)
	TCAL_06492	Protein kinase domain-containing protein. (484 aa)
	TCAL_08409	Uncharacterized protein. (1017 aa)
	TCAL_00360	Ribosomal protein S6 kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. S6 kinase subfamily. (467 aa)
	TCAL_04914	Uncharacterized protein. (852 aa)
	TCAL_07829	Uncharacterized protein. (645 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01671	TCAL_05061	A0A553PC37	A0A553P8P2	Uncharacterized protein.	Uncharacterized protein.	0.640
TCAL_04528	TCAL_05061	A0A553PD20	A0A553P8P2	Uncharacterized protein.	Uncharacterized protein.	0.788
TCAL_04528	TCAL_05373	A0A553PD20	A0A553NQQ2	Uncharacterized protein.	Uncharacterized protein.	0.765
TCAL_04528	TCAL_08409	A0A553PD20	A0A553N964	Uncharacterized protein.	Uncharacterized protein.	0.835
TCAL_04528	TCAL_12113	A0A553PD20	A0A553P2H5	Uncharacterized protein.	Uncharacterized protein.	0.834
TCAL_04914	TCAL_05061	A0A553NE86	A0A553P8P2	Uncharacterized protein.	Uncharacterized protein.	0.929
TCAL_05061	TCAL_01671	A0A553P8P2	A0A553PC37	Uncharacterized protein.	Uncharacterized protein.	0.640
TCAL_05061	TCAL_04528	A0A553P8P2	A0A553PD20	Uncharacterized protein.	Uncharacterized protein.	0.788
TCAL_05061	TCAL_04914	A0A553P8P2	A0A553NE86	Uncharacterized protein.	Uncharacterized protein.	0.929
TCAL_05061	TCAL_05192	A0A553P8P2	A0A553NXD6	Uncharacterized protein.	Uncharacterized protein.	0.896
TCAL_05061	TCAL_05373	A0A553P8P2	A0A553NQQ2	Uncharacterized protein.	Uncharacterized protein.	0.892
TCAL_05061	TCAL_06492	A0A553P8P2	A0A553PTP6	Uncharacterized protein.	Protein kinase domain-containing protein.	0.729
TCAL_05061	TCAL_06645	A0A553P8P2	A0A553NXJ0	Uncharacterized protein.	Uncharacterized protein.	0.736
TCAL_05061	TCAL_07829	A0A553P8P2	A0A553NQ81	Uncharacterized protein.	Uncharacterized protein.	0.896
TCAL_05061	TCAL_08409	A0A553P8P2	A0A553N964	Uncharacterized protein.	Uncharacterized protein.	0.987
TCAL_05061	TCAL_12113	A0A553P8P2	A0A553P2H5	Uncharacterized protein.	Uncharacterized protein.	0.894
TCAL_05192	TCAL_05061	A0A553NXD6	A0A553P8P2	Uncharacterized protein.	Uncharacterized protein.	0.896
TCAL_05282	TCAL_07007	A0A553NZN9	A0A553PDQ5	Uncharacterized protein.	Uncharacterized protein.	0.628
TCAL_05373	TCAL_04528	A0A553NQQ2	A0A553PD20	Uncharacterized protein.	Uncharacterized protein.	0.765
TCAL_05373	TCAL_05061	A0A553NQQ2	A0A553P8P2	Uncharacterized protein.	Uncharacterized protein.	0.892