(90 nodes) Microtubule-based transport network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_11279	Uncharacterized protein. (184 aa)
	TCAL_05689	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (475 aa)
	TCAL_09132	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (531 aa)
	TCAL_07969	Uncharacterized protein. (544 aa)
	TCAL_04406	Uncharacterized protein. (132 aa)
	TCAL_05699	Protein kinase domain-containing protein. (1225 aa)
	TCAL_09521	Uncharacterized protein. (223 aa)
	TCAL_10980	AAA_6 domain-containing protein. (252 aa)
	TCAL_03602	Protein kinase domain-containing protein. (695 aa)
	TCAL_07286	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (690 aa)
	TCAL_10881	Uncharacterized protein. (111 aa)
	TCAL_04922	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1038 aa)
	TCAL_02104	Uncharacterized protein. (105 aa)
	TCAL_02090	Uncharacterized protein. (4571 aa)
	TCAL_16567	Uncharacterized protein. (169 aa)
	TCAL_11495	Uncharacterized protein. (376 aa)
	TCAL_03906	Protein kinase domain-containing protein. (696 aa)
	TCAL_10774	ANAPC4_WD40 domain-containing protein. (1468 aa)
	TCAL_15256	DRBM domain-containing protein. (321 aa)
	TCAL_16465	Uncharacterized protein. (95 aa)
	TCAL_08038	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (761 aa)
	TCAL_02318	Uncharacterized protein. (1173 aa)
	TCAL_02317	Uncharacterized protein. (752 aa)
	TCAL_02285	SAC domain-containing protein. (594 aa)
	TCAL_03751	Uncharacterized protein. (668 aa)
	TCAL_09072	Uncharacterized protein. (130 aa)
	TCAL_11479	Uncharacterized protein. (1145 aa)
	TCAL_05862	Uncharacterized protein. (2804 aa)
	TCAL_14282	Uncharacterized protein. (389 aa)
	TCAL_04079	Uncharacterized protein. (4250 aa)
	TCAL_09626	Uncharacterized protein. (699 aa)
	TCAL_08636	Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family. (604 aa)
	TCAL_08065	Uncharacterized protein. (826 aa)
	TCAL_05644	WD_REPEATS_REGION domain-containing protein. (1370 aa)
	TCAL_07205	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1514 aa)
	TCAL_13344	Uncharacterized protein. (1411 aa)
	TCAL_10319	Protein kinase domain-containing protein. (996 aa)
	TCAL_10105	Uncharacterized protein. (661 aa)
	TCAL_01181	Uncharacterized protein. (276 aa)
	TCAL_17256	HAP1 N-terminal domain-containing protein. (111 aa)
	TCAL_01250	Uncharacterized protein. (1399 aa)
	TCAL_01252	Uncharacterized protein. (1326 aa)
	TCAL_02441	Uncharacterized protein. (533 aa)
	TCAL_02397	NDK domain-containing protein; Belongs to the NDK family. (241 aa)
	TCAL_15059	Protein kinase domain-containing protein. (650 aa)
	TCAL_03149	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (851 aa)
	TCAL_10131	START domain-containing protein. (384 aa)
	TCAL_12851	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1755 aa)
	TCAL_13153	Uncharacterized protein. (1150 aa)
	TCAL_03146	Uncharacterized protein. (406 aa)
	TCAL_03391	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (187 aa)
	TCAL_13038	Uncharacterized protein. (1478 aa)
	TCAL_01952	WD_REPEATS_REGION domain-containing protein. (511 aa)
	TCAL_09912	Uncharacterized protein. (612 aa)
	TCAL_05061	Uncharacterized protein. (1199 aa)
	TCAL_01586	Uncharacterized protein; Belongs to the actin family. (400 aa)
	TCAL_05022	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (941 aa)
	TCAL_01642	Uncharacterized protein. (557 aa)
	TCAL_05666	WD_REPEATS_REGION domain-containing protein. (710 aa)
	TCAL_06398	Uncharacterized protein. (873 aa)
	TCAL_08574	Uncharacterized protein. (4146 aa)
	TCAL_09757	Uncharacterized protein. (367 aa)
	TCAL_15600	Ima1_N domain-containing protein. (670 aa)
	TCAL_14551	Uncharacterized protein. (471 aa)
	TCAL_10495	Uncharacterized protein. (586 aa)
	TCAL_08679	Uncharacterized protein. (1812 aa)
	TCAL_13008	IFT81_CH domain-containing protein. (742 aa)
	TCAL_07316	Uncharacterized protein. (952 aa)
	TCAL_15983	Lebercilin domain-containing protein. (661 aa)
	TCAL_07609	Uncharacterized protein. (112 aa)
	TCAL_14766	SAC domain-containing protein. (162 aa)
	TCAL_09584	Uncharacterized protein. (405 aa)
	TCAL_17357	SAC domain-containing protein. (326 aa)
	TCAL_00034	SAC domain-containing protein. (596 aa)
	TCAL_06882	Uncharacterized protein. (320 aa)
	TCAL_06462	Uncharacterized protein. (231 aa)
	TCAL_16723	Protein kinase domain-containing protein. (85 aa)
	TCAL_12934	Uncharacterized protein. (739 aa)
	TCAL_11225	Uncharacterized protein. (244 aa)
	TCAL_06454	Uncharacterized protein. (862 aa)
	TCAL_05893	WD_REPEATS_REGION domain-containing protein. (1191 aa)
	TCAL_05126	Uncharacterized protein. (272 aa)
	TCAL_09894	Uncharacterized protein. (983 aa)
	TCAL_06066	Uncharacterized protein. (2552 aa)
	TCAL_06049	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (939 aa)
	TCAL_13467	Uncharacterized protein. (657 aa)
	TCAL_06777	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1729 aa)
	TCAL_10174	ABC_transp_aux domain-containing protein. (437 aa)
	TCAL_08853	Uncharacterized protein. (611 aa)
	TCAL_14477	Milton domain-containing protein. (985 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01250	TCAL_01252	A0A553NZS8	A0A553NZT7	Uncharacterized protein.	Uncharacterized protein.	0.963
TCAL_01250	TCAL_01642	A0A553NZS8	A0A553PA82	Uncharacterized protein.	Uncharacterized protein.	0.809
TCAL_01250	TCAL_01952	A0A553NZS8	A0A553P674	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.612
TCAL_01250	TCAL_02090	A0A553NZS8	A0A553NDG0	Uncharacterized protein.	Uncharacterized protein.	0.471
TCAL_01250	TCAL_03146	A0A553NZS8	A0A553P3M7	Uncharacterized protein.	Uncharacterized protein.	0.817
TCAL_01250	TCAL_04079	A0A553NZS8	A0A553NTK4	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_01250	TCAL_04406	A0A553NZS8	A0A553N7E4	Uncharacterized protein.	Uncharacterized protein.	0.633
TCAL_01250	TCAL_05022	A0A553NZS8	A0A553P9T3	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.557
TCAL_01250	TCAL_05644	A0A553NZS8	A0A553NUS2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
TCAL_01250	TCAL_05689	A0A553NZS8	A0A553N6B8	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.475
TCAL_01250	TCAL_05699	A0A553NZS8	A0A553N7Z2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.645
TCAL_01250	TCAL_05893	A0A553NZS8	A0A553PN77	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
TCAL_01250	TCAL_06454	A0A553NZS8	A0A553PLP6	Uncharacterized protein.	Uncharacterized protein.	0.849
TCAL_01250	TCAL_06462	A0A553NZS8	A0A553PJY2	Uncharacterized protein.	Uncharacterized protein.	0.986
TCAL_01250	TCAL_06882	A0A553NZS8	A0A553PIC6	Uncharacterized protein.	Uncharacterized protein.	0.787
TCAL_01250	TCAL_07286	A0A553NZS8	A0A553NBB0	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.557
TCAL_01250	TCAL_08038	A0A553NZS8	A0A553NNC1	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.557
TCAL_01250	TCAL_08574	A0A553NZS8	A0A553PBP8	Uncharacterized protein.	Uncharacterized protein.	0.471
TCAL_01250	TCAL_08853	A0A553NZS8	A0A553PTI3	Uncharacterized protein.	Uncharacterized protein.	0.791
TCAL_01250	TCAL_09072	A0A553NZS8	A0A553NQ42	Uncharacterized protein.	Uncharacterized protein.	0.633