STRINGSTRING
TCAL_07473 TCAL_07473 TCAL_14932 TCAL_14932 TCAL_10922 TCAL_10922 TCAL_14937 TCAL_14937 TCAL_01803 TCAL_01803 TCAL_09257 TCAL_09257 TCAL_17226 TCAL_17226 TCAL_00862 TCAL_00862 TCAL_09026 TCAL_09026 TCAL_05752 TCAL_05752 TCAL_08685 TCAL_08685 TCAL_12964 TCAL_12964 TCAL_00384 TCAL_00384 TCAL_00369 TCAL_00369 TCAL_11405 TCAL_11405 TCAL_13181 TCAL_13181 TCAL_00861 TCAL_00861 TCAL_00487 TCAL_00487 TCAL_02609 TCAL_02609 TCAL_14352 TCAL_14352 TCAL_00382 TCAL_00382 TCAL_08696 TCAL_08696 TCAL_08187 TCAL_08187 TCAL_00784 TCAL_00784 TCAL_10813 TCAL_10813 TCAL_08039 TCAL_08039 TCAL_03747 TCAL_03747 TCAL_02755 TCAL_02755 TCAL_02280 TCAL_02280 TCAL_16934 TCAL_16934 TCAL_02301 TCAL_02301 TCAL_11127 TCAL_11127 TCAL_07673 TCAL_07673 TCAL_08083 TCAL_08083 TCAL_03050 TCAL_03050 TCAL_09657 TCAL_09657 TCAL_10016 TCAL_10016 TCAL_01208 TCAL_01208 TCAL_07517 TCAL_07517 TCAL_09417 TCAL_09417 TCAL_06528 TCAL_06528 TCAL_07328 TCAL_07328 TCAL_02864 TCAL_02864 TCAL_05436 TCAL_05436 TCAL_04272 TCAL_04272 TCAL_04770 TCAL_04770 TCAL_08152 TCAL_08152 TCAL_04746 TCAL_04746 TCAL_12909 TCAL_12909 TCAL_00967 TCAL_00967 TCAL_15786 TCAL_15786 TCAL_05838 TCAL_05838 TCAL_13419 TCAL_13419 TCAL_11096 TCAL_11096 TCAL_01940 TCAL_01940 TCAL_01506 TCAL_01506 TCAL_10585 TCAL_10585 TCAL_05060 TCAL_05060 TCAL_07400 TCAL_07400 TCAL_06330 TCAL_06330 TCAL_09188 TCAL_09188 TCAL_00773 TCAL_00773 TCAL_06329 TCAL_06329 TCAL_10086 TCAL_10086 TCAL_00765 TCAL_00765 TCAL_07109 TCAL_07109 TCAL_00540 TCAL_00540 TCAL_04972 TCAL_04972 TCAL_09367 TCAL_09367 TCAL_02691 TCAL_02691 TCAL_00142 TCAL_00142 TCAL_10627 TCAL_10627 TCAL_06366 TCAL_06366 TCAL_00028 TCAL_00028 TCAL_00029 TCAL_00029 TCAL_07833 TCAL_07833 TCAL_12049 TCAL_12049 TCAL_15332 TCAL_15332 TCAL_04267 TCAL_04267 TCAL_06763 TCAL_06763 TCAL_06889 TCAL_06889 TCAL_05003 TCAL_05003 TCAL_07053 TCAL_07053 TCAL_10044 TCAL_10044
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCAL_07473AA_TRNA_LIGASE_II domain-containing protein. (818 aa)
TCAL_14932Methyltransf_25 domain-containing protein. (518 aa)
TCAL_10922Uncharacterized protein. (276 aa)
TCAL_14937Uncharacterized protein. (517 aa)
TCAL_01803Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (348 aa)
TCAL_09257Lactamase_B domain-containing protein. (364 aa)
TCAL_17226Uncharacterized protein. (171 aa)
TCAL_00862Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family. (281 aa)
TCAL_09026Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1000 aa)
TCAL_05752D-aminoacyl-tRNA deacylase. (169 aa)
TCAL_08685DTW domain-containing protein. (625 aa)
TCAL_12964tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (636 aa)
TCAL_00384Uncharacterized protein. (669 aa)
TCAL_00369Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (790 aa)
TCAL_11405Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the amidase family. GatA subfamily. (534 aa)
TCAL_13181DRBM domain-containing protein. (420 aa)
TCAL_00861TYW3 domain-containing protein. (546 aa)
TCAL_00487SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (641 aa)
TCAL_02609tRNA-dihydrouridine(47) synthase [NAD(P)(+)]. (588 aa)
TCAL_14352tRNA_int_end_N2 domain-containing protein. (418 aa)
TCAL_00382Uncharacterized protein. (1147 aa)
TCAL_08696tRNA (guanine(26)-N(2))-dimethyltransferase. (552 aa)
TCAL_08187Uncharacterized protein. (1036 aa)
TCAL_00784Lactamase_B domain-containing protein. (858 aa)
TCAL_10813Uncharacterized protein. (2349 aa)
TCAL_08039Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (992 aa)
TCAL_03747AA_TRNA_LIGASE_II_ALA domain-containing protein. (979 aa)
TCAL_02755TsaA-like domain-containing protein. (334 aa)
TCAL_02280Lysine--tRNA ligase. (584 aa)
TCAL_16934Uncharacterized protein. (75 aa)
TCAL_02301SAM-dependent MTase TRM10-type domain-containing protein. (288 aa)
TCAL_11127Uncharacterized protein. (205 aa)
TCAL_07673Uncharacterized protein. (319 aa)
TCAL_08083Formyl_trans_N domain-containing protein. (232 aa)
TCAL_03050Uncharacterized protein. (1271 aa)
TCAL_09657tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...] (310 aa)
TCAL_10016C3H1-type domain-containing protein. (569 aa)
TCAL_01208Uncharacterized protein. (94 aa)
TCAL_07517SAM-dependent MTase TRM10-type domain-containing protein. (474 aa)
TCAL_09417Uncharacterized protein. (481 aa)
TCAL_06528tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA. (361 aa)
TCAL_07328tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (740 aa)
TCAL_02864DALR_1 domain-containing protein. (390 aa)
TCAL_05436THUMP domain-containing protein. (427 aa)
TCAL_04272Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (899 aa)
TCAL_04770Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (422 aa)
TCAL_08152Uncharacterized protein. (140 aa)
TCAL_04746B3_4 domain-containing protein. (532 aa)
TCAL_12909Methyltransf_11 domain-containing protein. (2210 aa)
TCAL_00967Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] (403 aa)
TCAL_15786Uncharacterized protein. (230 aa)
TCAL_05838Uncharacterized protein. (359 aa)
TCAL_13419zf-Tim10_DDP domain-containing protein. (469 aa)
TCAL_11096tRNA-synt_1e domain-containing protein. (736 aa)
TCAL_01940B5 domain-containing protein. (583 aa)
TCAL_01506Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (677 aa)
TCAL_10585Uncharacterized protein. (514 aa)
TCAL_05060Uncharacterized protein. (615 aa)
TCAL_07400AA_TRNA_LIGASE_II domain-containing protein. (647 aa)
TCAL_06330AA_TRNA_LIGASE_II domain-containing protein. (844 aa)
TCAL_09188Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1089 aa)
TCAL_00773Tyrosine--tRNA ligase. (619 aa)
TCAL_06329Uncharacterized protein. (502 aa)
TCAL_10086Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily. (548 aa)
TCAL_00765AA_TRNA_LIGASE_II domain-containing protein. (499 aa)
TCAL_07109AA_TRNA_LIGASE_II domain-containing protein. (709 aa)
TCAL_00540Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs. (306 aa)
TCAL_04972Uncharacterized protein. (194 aa)
TCAL_09367tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family. (888 aa)
TCAL_02691Uncharacterized protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. (1217 aa)
TCAL_00142tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family. (429 aa)
TCAL_10627Queuine tRNA-ribosyltransferase accessory subunit 2; Non-catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine); Belongs to the queuine tRNA-ribosyltransferase family. QTRT2 subfamily. (380 aa)
TCAL_06366Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (1082 aa)
TCAL_00028Uncharacterized protein. (1138 aa)
TCAL_00029SpoU_methylase domain-containing protein. (185 aa)
TCAL_07833SAM_MT_TRM5_TYW2 domain-containing protein. (327 aa)
TCAL_12049Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (742 aa)
TCAL_15332Uncharacterized protein. (208 aa)
TCAL_04267S5A_REDUCTASE domain-containing protein. (540 aa)
TCAL_06763UPF0020 domain-containing protein. (698 aa)
TCAL_06889RF_PROK_I domain-containing protein. (185 aa)
TCAL_05003PlsC domain-containing protein. (990 aa)
TCAL_07053Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (509 aa)
TCAL_10044Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (337 aa)
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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