30 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_04131	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (188 aa)
	TCAL_03217	Uncharacterized protein. (105 aa)
	TCAL_13329	Uncharacterized protein. (174 aa)
	TCAL_02369	Uncharacterized protein. (112 aa)
	TCAL_16413	Uncharacterized protein; Belongs to the cytochrome c oxidase subunit 6A family. (113 aa)
	TCAL_02370	zf-CHCC domain-containing protein. (121 aa)
	TCAL_09109	Epimerase domain-containing protein. (441 aa)
	TCAL_00971	Uncharacterized protein. (88 aa)
	TCAL_08370	Uncharacterized protein. (244 aa)
	TCAL_07035	Uncharacterized protein. (90 aa)
	TCAL_00157	Uncharacterized protein. (126 aa)
	TCAL_11561	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q); Belongs to the CybS family. (178 aa)
	TCAL_07917	Uncharacterized protein. (456 aa)
	TCAL_06478	Uncharacterized protein; Belongs to the complex I 49 kDa subunit family. (474 aa)
	TCAL_01724	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (659 aa)
	TCAL_07371	Uncharacterized protein. (169 aa)
	TCAL_17065	Uncharacterized protein. (297 aa)
	TCAL_12405	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family. (731 aa)
	TCAL_11005	Uncharacterized protein. (136 aa)
	TCAL_08938	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (308 aa)
	CYC1	Cytochrome c1. (276 aa)
	TCAL_01480	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family. (273 aa)
	TCAL_06667	Uncharacterized protein. (153 aa)
	TCAL_04175	Uncharacterized protein. (186 aa)
	TCAL_00331	Uncharacterized protein. (152 aa)
	TCAL_00849	Uncharacterized protein. (193 aa)
	TCAL_00848	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family. (225 aa)
	TCAL_00807	Uncharacterized protein. (191 aa)
	TCAL_03319	Uncharacterized protein. (154 aa)
	TCAL_05872	Uncharacterized protein. (269 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYC1	TCAL_00157	Q6VBC0	A0A553PG97	Cytochrome c1.	Uncharacterized protein.	0.991
CYC1	TCAL_00331	Q6VBC0	A0A553NAU6	Cytochrome c1.	Uncharacterized protein.	0.959
CYC1	TCAL_00807	Q6VBC0	A0A553NFE5	Cytochrome c1.	Uncharacterized protein.	0.995
CYC1	TCAL_00848	Q6VBC0	A0A553NFC5	Cytochrome c1.	Oxidored_q6 domain-containing protein; Belongs to the complex I 20 kDa subunit family.	0.999
CYC1	TCAL_00849	Q6VBC0	A0A553NFA6	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_00971	Q6VBC0	A0A553P7T2	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_01480	Q6VBC0	A0A553N6Z3	Cytochrome c1.	Complex1_30kDa domain-containing protein; Belongs to the complex I 30 kDa subunit family.	0.999
CYC1	TCAL_01724	Q6VBC0	A0A553PMM5	Cytochrome c1.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.988
CYC1	TCAL_02370	Q6VBC0	A0A553P0F0	Cytochrome c1.	zf-CHCC domain-containing protein.	0.993
CYC1	TCAL_03217	Q6VBC0	A0A553NTV3	Cytochrome c1.	Uncharacterized protein.	0.998
CYC1	TCAL_03319	Q6VBC0	A0A553NNL5	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_04131	Q6VBC0	A0A553NTU6	Cytochrome c1.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.982
CYC1	TCAL_04175	Q6VBC0	A0A553N837	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_05872	Q6VBC0	A0A553NNU2	Cytochrome c1.	Uncharacterized protein.	0.938
CYC1	TCAL_06478	Q6VBC0	A0A553PLL3	Cytochrome c1.	Uncharacterized protein; Belongs to the complex I 49 kDa subunit family.	0.999
CYC1	TCAL_06667	Q6VBC0	A0A553N7S9	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_07035	Q6VBC0	A0A553PAM6	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_07371	Q6VBC0	A0A553PNC9	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_07917	Q6VBC0	A0A553PI78	Cytochrome c1.	Uncharacterized protein.	0.999
CYC1	TCAL_08370	Q6VBC0	A0A553PAI0	Cytochrome c1.	Uncharacterized protein.	0.999