19 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_13035	FHA domain-containing protein. (1727 aa)
	TCAL_05140	Exo84_C domain-containing protein. (659 aa)
	TCAL_02176	Uncharacterized protein. (3194 aa)
	TCAL_08432	EF-hand domain-containing protein. (153 aa)
	TCAL_15145	Ig-like domain-containing protein. (153 aa)
	TCAL_04665	W2 domain-containing protein. (422 aa)
	TCAL_07630	Uncharacterized protein. (1355 aa)
	TCAL_04881	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (497 aa)
	TCAL_00171	Uncharacterized protein. (1151 aa)
	TCAL_14207	Uncharacterized protein. (649 aa)
	TCAL_00182	Reticulon-like protein. (193 aa)
	TCAL_09177	Coronin; Belongs to the WD repeat coronin family. (1391 aa)
	TCAL_05043	HP domain-containing protein. (507 aa)
	TCAL_10430	Sec8_exocyst domain-containing protein. (501 aa)
	TCAL_10087	Uncharacterized protein. (674 aa)
	TCAL_01623	Uncharacterized protein. (500 aa)
	TCAL_00025	Uncharacterized protein. (1041 aa)
	TCAL_07057	Reticulon-like protein. (190 aa)
	TCAL_09627	Amidohydro-rel domain-containing protein. (423 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00171	TCAL_10430	A0A553P2I3	A0A553PC08	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.440
TCAL_02176	TCAL_07630	A0A553N9Q5	A0A553NVW3	Uncharacterized protein.	Uncharacterized protein.	0.588
TCAL_02176	TCAL_14207	A0A553N9Q5	A0A553NSR3	Uncharacterized protein.	Uncharacterized protein.	0.586
TCAL_02176	TCAL_15145	A0A553N9Q5	A0A553NTX5	Uncharacterized protein.	Ig-like domain-containing protein.	0.588
TCAL_04881	TCAL_08432	A0A553NWZ1	A0A553N7F9	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	EF-hand domain-containing protein.	0.458
TCAL_05043	TCAL_10087	A0A553P8M4	A0A553PC34	HP domain-containing protein.	Uncharacterized protein.	0.420
TCAL_05140	TCAL_10430	A0A553NEF8	A0A553PC08	Exo84_C domain-containing protein.	Sec8_exocyst domain-containing protein.	0.999
TCAL_07630	TCAL_02176	A0A553NVW3	A0A553N9Q5	Uncharacterized protein.	Uncharacterized protein.	0.588
TCAL_08432	TCAL_04881	A0A553N7F9	A0A553NWZ1	EF-hand domain-containing protein.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.458
TCAL_10087	TCAL_05043	A0A553PC34	A0A553P8M4	Uncharacterized protein.	HP domain-containing protein.	0.420
TCAL_10430	TCAL_00171	A0A553PC08	A0A553P2I3	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.440
TCAL_10430	TCAL_05140	A0A553PC08	A0A553NEF8	Sec8_exocyst domain-containing protein.	Exo84_C domain-containing protein.	0.999
TCAL_14207	TCAL_02176	A0A553NSR3	A0A553N9Q5	Uncharacterized protein.	Uncharacterized protein.	0.586
TCAL_15145	TCAL_02176	A0A553NTX5	A0A553N9Q5	Ig-like domain-containing protein.	Uncharacterized protein.	0.588