(6 nodes) Intraciliary transport particle A network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05644	WD_REPEATS_REGION domain-containing protein. (1370 aa)
	TCAL_01250	Uncharacterized protein. (1399 aa)
	TCAL_01252	Uncharacterized protein. (1326 aa)
	TCAL_06462	Uncharacterized protein. (231 aa)
	TCAL_05893	WD_REPEATS_REGION domain-containing protein. (1191 aa)
	TCAL_10774	ANAPC4_WD40 domain-containing protein. (1468 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01250	TCAL_01252	A0A553NZS8	A0A553NZT7	Uncharacterized protein.	Uncharacterized protein.	0.963
TCAL_01250	TCAL_05644	A0A553NZS8	A0A553NUS2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
TCAL_01250	TCAL_05893	A0A553NZS8	A0A553PN77	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
TCAL_01250	TCAL_06462	A0A553NZS8	A0A553PJY2	Uncharacterized protein.	Uncharacterized protein.	0.986
TCAL_01250	TCAL_10774	A0A553NZS8	A0A553NF88	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.993
TCAL_01252	TCAL_01250	A0A553NZT7	A0A553NZS8	Uncharacterized protein.	Uncharacterized protein.	0.963
TCAL_01252	TCAL_05644	A0A553NZT7	A0A553NUS2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.972
TCAL_01252	TCAL_05893	A0A553NZT7	A0A553PN77	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.971
TCAL_01252	TCAL_06462	A0A553NZT7	A0A553PJY2	Uncharacterized protein.	Uncharacterized protein.	0.967
TCAL_01252	TCAL_10774	A0A553NZT7	A0A553NF88	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.978
TCAL_05644	TCAL_01250	A0A553NUS2	A0A553NZS8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
TCAL_05644	TCAL_01252	A0A553NUS2	A0A553NZT7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.972
TCAL_05644	TCAL_05893	A0A553NUS2	A0A553PN77	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
TCAL_05644	TCAL_06462	A0A553NUS2	A0A553PJY2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.987
TCAL_05644	TCAL_10774	A0A553NUS2	A0A553NF88	WD_REPEATS_REGION domain-containing protein.	ANAPC4_WD40 domain-containing protein.	0.995
TCAL_05893	TCAL_01250	A0A553PN77	A0A553NZS8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
TCAL_05893	TCAL_01252	A0A553PN77	A0A553NZT7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.971
TCAL_05893	TCAL_05644	A0A553PN77	A0A553NUS2	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
TCAL_05893	TCAL_06462	A0A553PN77	A0A553PJY2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.990
TCAL_05893	TCAL_10774	A0A553PN77	A0A553NF88	WD_REPEATS_REGION domain-containing protein.	ANAPC4_WD40 domain-containing protein.	0.997