52 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_06780	Uncharacterized protein. (1181 aa)
	TCAL_12385	Uncharacterized protein. (489 aa)
	TCAL_17052	Uncharacterized protein. (198 aa)
	TCAL_07561	Uncharacterized protein. (1366 aa)
	TCAL_09014	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (139 aa)
	TCAL_09275	Uncharacterized protein. (778 aa)
	TCAL_10078	Uncharacterized protein. (4291 aa)
	TCAL_13472	Uncharacterized protein. (1261 aa)
	TCAL_06676	Uncharacterized protein. (888 aa)
	TCAL_08409	Uncharacterized protein. (1017 aa)
	TCAL_11305	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1421 aa)
	TCAL_08416	Uncharacterized protein. (657 aa)
	TCAL_03186	Uncharacterized protein. (1857 aa)
	TCAL_03897	FABD domain-containing protein. (981 aa)
	TCAL_02623	EF-hand domain-containing protein. (471 aa)
	TCAL_07264	GRASP55_65 domain-containing protein. (432 aa)
	TCAL_08029	UBX domain-containing protein. (867 aa)
	TCAL_05373	Uncharacterized protein. (5063 aa)
	TCAL_03803	Uncharacterized protein. (432 aa)
	TCAL_01388	Uncharacterized protein. (1522 aa)
	TCAL_02491	Uncharacterized protein. (303 aa)
	TCAL_11650	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (494 aa)
	TCAL_11978	Uncharacterized protein. (493 aa)
	TCAL_04429	Uncharacterized protein. (1726 aa)
	TCAL_01393	Uncharacterized protein. (934 aa)
	TCAL_02824	TPR_REGION domain-containing protein. (627 aa)
	TCAL_06645	Uncharacterized protein. (1069 aa)
	TCAL_05282	Uncharacterized protein. (2819 aa)
	TCAL_01097	CABIT domain-containing protein. (674 aa)
	TCAL_09060	Uncharacterized protein. (326 aa)
	TCAL_04754	Prospero domain-containing protein. (1463 aa)
	TCAL_12113	Uncharacterized protein. (1560 aa)
	TCAL_01127	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (218 aa)
	TCAL_05384	Uncharacterized protein. (710 aa)
	TCAL_16226	Uncharacterized protein. (638 aa)
	TCAL_11300	Uncharacterized protein. (1527 aa)
	TCAL_14659	Ras-associating domain-containing protein. (562 aa)
	TCAL_06022	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (405 aa)
	TCAL_02253	Uncharacterized protein. (1256 aa)
	TCAL_02252	Uncharacterized protein. (535 aa)
	TCAL_04528	Uncharacterized protein. (1418 aa)
	TCAL_03849	Uncharacterized protein. (905 aa)
	TCAL_03504	Uncharacterized protein. (758 aa)
	TCAL_03505	Uncharacterized protein. (617 aa)
	TCAL_05312	Uncharacterized protein. (548 aa)
	TCAL_10197	Uncharacterized protein. (666 aa)
	TCAL_00162	Uncharacterized protein. (1159 aa)
	TCAL_09306	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling. (766 aa)
	TCAL_13221	Uncharacterized protein. (963 aa)
	TCAL_08761	PH domain-containing protein. (1058 aa)
	TCAL_14792	PB1 domain-containing protein. (117 aa)
	TCAL_08844	Uncharacterized protein. (575 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00162	TCAL_01127	A0A553PI46	A0A553P2V8	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.586
TCAL_00162	TCAL_05282	A0A553PI46	A0A553NZN9	Uncharacterized protein.	Uncharacterized protein.	0.433
TCAL_00162	TCAL_09014	A0A553PI46	A0A553PSM2	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.586
TCAL_01097	TCAL_04429	A0A553P1J3	A0A553NUF1	CABIT domain-containing protein.	Uncharacterized protein.	0.475
TCAL_01127	TCAL_00162	A0A553P2V8	A0A553PI46	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Uncharacterized protein.	0.586
TCAL_01127	TCAL_01393	A0A553P2V8	A0A553NUX3	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Uncharacterized protein.	0.420
TCAL_01127	TCAL_06022	A0A553P2V8	A0A553P7V5	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.420
TCAL_01127	TCAL_10078	A0A553P2V8	A0A553N6Y6	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Uncharacterized protein.	0.420
TCAL_01393	TCAL_01127	A0A553NUX3	A0A553P2V8	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.420
TCAL_01393	TCAL_03897	A0A553NUX3	A0A553NBR6	Uncharacterized protein.	FABD domain-containing protein.	0.514
TCAL_01393	TCAL_05312	A0A553NUX3	A0A553PHS5	Uncharacterized protein.	Uncharacterized protein.	0.498
TCAL_01393	TCAL_06022	A0A553NUX3	A0A553P7V5	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.573
TCAL_01393	TCAL_06780	A0A553NUX3	A0A553PP53	Uncharacterized protein.	Uncharacterized protein.	0.514
TCAL_01393	TCAL_09014	A0A553NUX3	A0A553PSM2	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.420
TCAL_01393	TCAL_09306	A0A553NUX3	A0A553PJN3	Uncharacterized protein.	Delta-like protein; Putative Notch ligand involved in the mediation of Notch signaling.	0.434
TCAL_01393	TCAL_10078	A0A553NUX3	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.551
TCAL_01393	TCAL_11305	A0A553NUX3	A0A553N9M7	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.514
TCAL_01393	TCAL_14792	A0A553NUX3	A0A553PNM7	Uncharacterized protein.	PB1 domain-containing protein.	0.514
TCAL_02252	TCAL_02824	A0A553P890	A0A553NX24	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.775
TCAL_02252	TCAL_07561	A0A553P890	A0A553PQU2	Uncharacterized protein.	Uncharacterized protein.	0.526