56 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_10714	TYR_PHOSPHATASE_2 domain-containing protein. (191 aa)
	TCAL_07458	Uncharacterized protein. (380 aa)
	TCAL_10721	Uncharacterized protein. (928 aa)
	TCAL_05736	Uncharacterized protein. (1582 aa)
	TCAL_02173	Uncharacterized protein. (342 aa)
	TCAL_03708	Uncharacterized protein. (412 aa)
	TCAL_03608	Uncharacterized protein. (504 aa)
	TCAL_04010	Uncharacterized protein. (1441 aa)
	TCAL_04299	Uncharacterized protein. (1804 aa)
	TCAL_00425	Uncharacterized protein. (828 aa)
	TCAL_08699	Uncharacterized protein. (615 aa)
	TCAL_14664	TYR_PHOSPHATASE_2 domain-containing protein. (152 aa)
	TCAL_12462	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (501 aa)
	TCAL_03807	Uncharacterized protein. (877 aa)
	TCAL_05071	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (1207 aa)
	TCAL_15167	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (329 aa)
	TCAL_12072	Uncharacterized protein. (707 aa)
	TCAL_09404	Uncharacterized protein. (537 aa)
	TCAL_10021	Uncharacterized protein. (1096 aa)
	TCAL_04820	Uncharacterized protein. (1710 aa)
	TCAL_11614	Uncharacterized protein. (1281 aa)
	TCAL_11613	Uncharacterized protein. (1361 aa)
	TCAL_08245	Uncharacterized protein. (1235 aa)
	TCAL_12939	Uncharacterized protein. (1175 aa)
	TCAL_01236	Uncharacterized protein. (1434 aa)
	TCAL_04833	Uncharacterized protein. (1145 aa)
	TCAL_15050	Tyrosine-protein phosphatase domain-containing protein. (117 aa)
	TCAL_09599	Polynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (617 aa)
	TCAL_12498	Uncharacterized protein. (963 aa)
	TCAL_12454	Tyrosine-protein phosphatase domain-containing protein. (318 aa)
	TCAL_13952	TYR_PHOSPHATASE_2 domain-containing protein. (713 aa)
	TCAL_11681	Uncharacterized protein. (1571 aa)
	TCAL_01661	Uncharacterized protein. (1002 aa)
	TCAL_00646	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (254 aa)
	TCAL_06355	Uncharacterized protein. (714 aa)
	TCAL_06354	Tyrosine-protein phosphatase domain-containing protein. (532 aa)
	TCAL_06356	Uncharacterized protein. (300 aa)
	TCAL_07031	Uncharacterized protein. (1354 aa)
	TCAL_11864	Uncharacterized protein. (2009 aa)
	TCAL_03830	TYR_PHOSPHATASE_2 domain-containing protein. (550 aa)
	TCAL_10205	TYR_PHOSPHATASE_2 domain-containing protein. (170 aa)
	TCAL_13118	Uncharacterized protein. (687 aa)
	TCAL_00165	Uncharacterized protein. (601 aa)
	TCAL_06161	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (298 aa)
	TCAL_07722	TYR_PHOSPHATASE_2 domain-containing protein. (274 aa)
	TCAL_10411	Uncharacterized protein. (754 aa)
	TCAL_06766	Uncharacterized protein. (324 aa)
	TCAL_04240	TYR_PHOSPHATASE_2 domain-containing protein. (546 aa)
	TCAL_06810	Uncharacterized protein. (396 aa)
	TCAL_06471	Dual specificity protein phosphatase; Dual specificity phosphatase able to dephosphorylate phosphotyrosine, phosphoserine and phosphothreonine residues, with a preference for phosphotyrosine as a substrate. Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (201 aa)
	TCAL_11593	Uncharacterized protein. (639 aa)
	TCAL_08342	Uncharacterized protein. (1011 aa)
	TCAL_10792	Uncharacterized protein. (605 aa)
	TCAL_10791	Uncharacterized protein. (613 aa)
	TCAL_07067	Uncharacterized protein. (1049 aa)
	TCAL_09892	Uncharacterized protein. (760 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00165	TCAL_07458	A0A553PI52	A0A553N840	Uncharacterized protein.	Uncharacterized protein.	0.718
TCAL_00165	TCAL_09892	A0A553PI52	A0A553PR27	Uncharacterized protein.	Uncharacterized protein.	0.731
TCAL_00646	TCAL_08245	A0A553PA28	A0A553NYV7	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Uncharacterized protein.	0.470
TCAL_01236	TCAL_07458	A0A553NZD8	A0A553N840	Uncharacterized protein.	Uncharacterized protein.	0.669
TCAL_01236	TCAL_09892	A0A553NZD8	A0A553PR27	Uncharacterized protein.	Uncharacterized protein.	0.685
TCAL_01236	TCAL_11681	A0A553NZD8	A0A553P7N6	Uncharacterized protein.	Uncharacterized protein.	0.449
TCAL_01661	TCAL_09892	A0A553PA13	A0A553PR27	Uncharacterized protein.	Uncharacterized protein.	0.635
TCAL_02173	TCAL_08245	A0A553N9K0	A0A553NYV7	Uncharacterized protein.	Uncharacterized protein.	0.470
TCAL_03608	TCAL_06356	A0A553NBK5	A0A553PAB9	Uncharacterized protein.	Uncharacterized protein.	0.476
TCAL_03708	TCAL_08245	A0A553N9P5	A0A553NYV7	Uncharacterized protein.	Uncharacterized protein.	0.470
TCAL_03807	TCAL_08245	A0A553NSD1	A0A553NYV7	Uncharacterized protein.	Uncharacterized protein.	0.470
TCAL_04010	TCAL_04299	A0A553NCL9	A0A553NCQ2	Uncharacterized protein.	Uncharacterized protein.	0.668
TCAL_04299	TCAL_04010	A0A553NCQ2	A0A553NCL9	Uncharacterized protein.	Uncharacterized protein.	0.668
TCAL_04299	TCAL_07031	A0A553NCQ2	A0A553PAN0	Uncharacterized protein.	Uncharacterized protein.	0.434
TCAL_04299	TCAL_09892	A0A553NCQ2	A0A553PR27	Uncharacterized protein.	Uncharacterized protein.	0.665
TCAL_04299	TCAL_11593	A0A553NCQ2	A0A553PLW3	Uncharacterized protein.	Uncharacterized protein.	0.400
TCAL_04820	TCAL_09892	A0A553NXJ9	A0A553PR27	Uncharacterized protein.	Uncharacterized protein.	0.613
TCAL_05071	TCAL_08245	A0A553NTU5	A0A553NYV7	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Uncharacterized protein.	0.470
TCAL_06161	TCAL_08245	A0A553PJM0	A0A553NYV7	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Uncharacterized protein.	0.470
TCAL_06354	TCAL_09892	A0A553PAB3	A0A553PR27	Tyrosine-protein phosphatase domain-containing protein.	Uncharacterized protein.	0.562