(39 nodes) DnaJ domain network (Tigriopus californicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_10445	Uncharacterized protein. (1135 aa)
	TCAL_09273	J domain-containing protein. (382 aa)
	TCAL_04794	J domain-containing protein. (917 aa)
	TCAL_08327	J domain-containing protein. (362 aa)
	TCAL_10812	J domain-containing protein. (776 aa)
	TCAL_07161	Uncharacterized protein. (783 aa)
	TCAL_05462	Uncharacterized protein. (946 aa)
	TCAL_06106	J domain-containing protein. (302 aa)
	TCAL_09987	J domain-containing protein. (487 aa)
	TCAL_11622	J domain-containing protein. (227 aa)
	TCAL_08246	J domain-containing protein. (385 aa)
	TCAL_04835	J domain-containing protein. (133 aa)
	TCAL_02633	Uncharacterized protein. (412 aa)
	TCAL_05260	J domain-containing protein. (270 aa)
	TCAL_02292	Uncharacterized protein. (515 aa)
	TCAL_06941	J domain-containing protein. (388 aa)
	TCAL_02859	J domain-containing protein. (331 aa)
	TCAL_05614	J domain-containing protein. (367 aa)
	TCAL_04424	Uncharacterized protein. (339 aa)
	TCAL_07669	J domain-containing protein. (387 aa)
	TCAL_13330	J domain-containing protein. (115 aa)
	TCAL_14407	J domain-containing protein. (264 aa)
	TCAL_06614	J domain-containing protein. (257 aa)
	TCAL_16023	J domain-containing protein. (89 aa)
	TCAL_07875	Uncharacterized protein. (527 aa)
	TCAL_03631	Uncharacterized protein. (480 aa)
	TCAL_16656	J domain-containing protein. (456 aa)
	TCAL_00463	J domain-containing protein. (120 aa)
	TCAL_03589	Uncharacterized protein. (154 aa)
	TCAL_07868	J domain-containing protein. (2341 aa)
	TCAL_06469	J domain-containing protein. (235 aa)
	TCAL_01484	Uncharacterized protein. (624 aa)
	TCAL_01598	J domain-containing protein. (211 aa)
	TCAL_00519	J domain-containing protein. (368 aa)
	TCAL_05668	J domain-containing protein. (606 aa)
	TCAL_02170	J domain-containing protein. (363 aa)
	TCAL_02118	Uncharacterized protein. (533 aa)
	TCAL_03607	Uncharacterized protein. (804 aa)
	TCAL_01486	J domain-containing protein. (350 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00463	TCAL_02118	A0A553NDB3	A0A553N9T8	J domain-containing protein.	Uncharacterized protein.	0.400
TCAL_00463	TCAL_10445	A0A553NDB3	A0A553PU52	J domain-containing protein.	Uncharacterized protein.	0.547
TCAL_00463	TCAL_10812	A0A553NDB3	A0A553NFG3	J domain-containing protein.	J domain-containing protein.	0.596
TCAL_00519	TCAL_02292	A0A553PB53	A0A553NQK4	J domain-containing protein.	Uncharacterized protein.	0.690
TCAL_00519	TCAL_02633	A0A553PB53	A0A553NG23	J domain-containing protein.	Uncharacterized protein.	0.821
TCAL_00519	TCAL_03631	A0A553PB53	A0A553NCE0	J domain-containing protein.	Uncharacterized protein.	0.474
TCAL_00519	TCAL_04424	A0A553PB53	A0A553NUE9	J domain-containing protein.	Uncharacterized protein.	0.823
TCAL_00519	TCAL_08246	A0A553PB53	A0A553NZA2	J domain-containing protein.	J domain-containing protein.	0.520
TCAL_00519	TCAL_08327	A0A553PB53	A0A553PPT9	J domain-containing protein.	J domain-containing protein.	0.552
TCAL_00519	TCAL_09273	A0A553PB53	A0A553PT03	J domain-containing protein.	J domain-containing protein.	0.465
TCAL_00519	TCAL_09987	A0A553PB53	A0A553P232	J domain-containing protein.	J domain-containing protein.	0.429
TCAL_00519	TCAL_14407	A0A553PB53	A0A553PK83	J domain-containing protein.	J domain-containing protein.	0.612
TCAL_01484	TCAL_02118	A0A553N6Y3	A0A553N9T8	Uncharacterized protein.	Uncharacterized protein.	0.541
TCAL_01484	TCAL_02170	A0A553N6Y3	A0A553N9M8	Uncharacterized protein.	J domain-containing protein.	0.584
TCAL_01484	TCAL_02292	A0A553N6Y3	A0A553NQK4	Uncharacterized protein.	Uncharacterized protein.	0.709
TCAL_01484	TCAL_02633	A0A553N6Y3	A0A553NG23	Uncharacterized protein.	Uncharacterized protein.	0.725
TCAL_01484	TCAL_03607	A0A553N6Y3	A0A553NBA4	Uncharacterized protein.	Uncharacterized protein.	0.908
TCAL_01484	TCAL_03631	A0A553N6Y3	A0A553NCE0	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_01484	TCAL_04424	A0A553N6Y3	A0A553NUE9	Uncharacterized protein.	Uncharacterized protein.	0.725
TCAL_01484	TCAL_06614	A0A553N6Y3	A0A553PLU8	Uncharacterized protein.	J domain-containing protein.	0.436