93 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05507	Uncharacterized protein. (1339 aa)
	TCAL_09701	Uncharacterized protein. (1702 aa)
	TCAL_02313	Uncharacterized protein. (987 aa)
	TCAL_15064	Fibronectin type-III domain-containing protein. (62 aa)
	TCAL_01850	Uncharacterized protein. (1298 aa)
	TCAL_14320	Fibronectin type-III domain-containing protein. (873 aa)
	TCAL_01862	Uncharacterized protein. (1390 aa)
	TCAL_13734	Uncharacterized protein. (398 aa)
	TCAL_03202	Uncharacterized protein. (2771 aa)
	TCAL_02176	Uncharacterized protein. (3194 aa)
	TCAL_08422	Uncharacterized protein. (7568 aa)
	TCAL_03687	Uncharacterized protein. (861 aa)
	TCAL_10078	Uncharacterized protein. (4291 aa)
	TCAL_14959	Uncharacterized protein. (789 aa)
	TCAL_02348	Uncharacterized protein. (1147 aa)
	TCAL_08245	Uncharacterized protein. (1235 aa)
	TCAL_12939	Uncharacterized protein. (1175 aa)
	TCAL_04520	Uncharacterized protein. (1259 aa)
	TCAL_04584	Uncharacterized protein. (807 aa)
	TCAL_04975	Uncharacterized protein. (1593 aa)
	TCAL_00639	Uncharacterized protein. (2463 aa)
	TCAL_11864	Uncharacterized protein. (2009 aa)
	TCAL_10687	Uncharacterized protein. (897 aa)
	TCAL_09210	Uncharacterized protein. (2186 aa)
	TCAL_00006	Fibronectin type-III domain-containing protein. (1885 aa)
	TCAL_15340	Uncharacterized protein. (519 aa)
	TCAL_01681	Uncharacterized protein. (1060 aa)
	TCAL_06809	Uncharacterized protein. (447 aa)
	TCAL_13788	Uncharacterized protein. (475 aa)
	TCAL_12741	Uncharacterized protein. (1440 aa)
	TCAL_12442	Uncharacterized protein. (462 aa)
	TCAL_12443	Uncharacterized protein. (503 aa)
	TCAL_15402	Uncharacterized protein. (467 aa)
	TCAL_08516	Uncharacterized protein. (1549 aa)
	TCAL_08987	Uncharacterized protein. (1201 aa)
	TCAL_12225	Uncharacterized protein. (1030 aa)
	TCAL_06811	Uncharacterized protein. (544 aa)
	TCAL_06812	Uncharacterized protein. (534 aa)
	TCAL_10910	Uncharacterized protein. (1022 aa)
	TCAL_04993	Uncharacterized protein. (1614 aa)
	TCAL_12149	Uncharacterized protein. (627 aa)
	TCAL_09303	Uncharacterized protein. (361 aa)
	TCAL_06182	Uncharacterized protein. (505 aa)
	TCAL_07581	Uncharacterized protein. (1818 aa)
	TCAL_07587	Uncharacterized protein. (4069 aa)
	TCAL_12654	Uncharacterized protein. (318 aa)
	TCAL_13219	Uncharacterized protein. (596 aa)
	TCAL_04329	Uncharacterized protein. (1384 aa)
	TCAL_01989	Uncharacterized protein. (164 aa)
	TCAL_04830	Uncharacterized protein. (1994 aa)
	TCAL_01236	Uncharacterized protein. (1434 aa)
	TCAL_05933	Uncharacterized protein. (2129 aa)
	TCAL_06641	Uncharacterized protein. (691 aa)
	TCAL_09286	Uncharacterized protein. (1050 aa)
	TCAL_01110	Uncharacterized protein. (945 aa)
	TCAL_12498	Uncharacterized protein. (963 aa)
	TCAL_11940	Uncharacterized protein. (962 aa)
	TCAL_04738	Uncharacterized protein. (1183 aa)
	TCAL_09057	Uncharacterized protein. (779 aa)
	TCAL_00258	Uncharacterized protein. (1383 aa)
	TCAL_00282	Uncharacterized protein. (1184 aa)
	TCAL_12237	Uncharacterized protein. (1425 aa)
	TCAL_09961	Fibronectin type-III domain-containing protein. (436 aa)
	TCAL_09059	Uncharacterized protein. (1553 aa)
	TCAL_03115	Uncharacterized protein. (1454 aa)
	TCAL_11003	Uncharacterized protein. (2078 aa)
	TCAL_11263	Uncharacterized protein. (902 aa)
	TCAL_03405	Uncharacterized protein. (975 aa)
	TCAL_03969	Uncharacterized protein. (843 aa)
	TCAL_06722	Uncharacterized protein. (789 aa)
	TCAL_12673	Uncharacterized protein. (1044 aa)
	TCAL_11681	Uncharacterized protein. (1571 aa)
	TCAL_15768	Uncharacterized protein. (313 aa)
	TCAL_08537	Uncharacterized protein. (1790 aa)
	TCAL_00641	Uncharacterized protein. (808 aa)
	TCAL_00705	Uncharacterized protein. (836 aa)
	TCAL_14558	Uncharacterized protein. (587 aa)
	TCAL_06384	Uncharacterized protein. (891 aa)
	TCAL_06385	Uncharacterized protein. (865 aa)
	TCAL_04528	Uncharacterized protein. (1418 aa)
	TCAL_04484	DUF4808 domain-containing protein. (664 aa)
	TCAL_11613	Uncharacterized protein. (1361 aa)
	TCAL_11614	Uncharacterized protein. (1281 aa)
	TCAL_10059	Uncharacterized protein. (9067 aa)
	TCAL_06645	Uncharacterized protein. (1069 aa)
	TCAL_10021	Uncharacterized protein. (1096 aa)
	TCAL_07630	Uncharacterized protein. (1355 aa)
	TCAL_01393	Uncharacterized protein. (934 aa)
	TCAL_05073	Uncharacterized protein. (2022 aa)
	TCAL_14207	Uncharacterized protein. (649 aa)
	TCAL_14203	Fibronectin type-III domain-containing protein. (768 aa)
	TCAL_01401	Uncharacterized protein. (2148 aa)
	TCAL_07468	Fibronectin type-III domain-containing protein. (1007 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00258	TCAL_01393	A0A553P240	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00258	TCAL_10078	A0A553P240	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00282	TCAL_01393	A0A553P282	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00282	TCAL_10078	A0A553P282	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00282	TCAL_11681	A0A553P282	A0A553P7N6	Uncharacterized protein.	Uncharacterized protein.	0.408
TCAL_00639	TCAL_01850	A0A553PDR4	A0A553NF68	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_01862	A0A553PDR4	A0A553NDT1	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_07630	A0A553PDR4	A0A553NVW3	Uncharacterized protein.	Uncharacterized protein.	0.501
TCAL_00639	TCAL_08516	A0A553PDR4	A0A553PL11	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_10059	A0A553PDR4	A0A553NXN7	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_14207	A0A553PDR4	A0A553NSR3	Uncharacterized protein.	Uncharacterized protein.	0.501
TCAL_00641	TCAL_01393	A0A553PBZ6	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.421
TCAL_00641	TCAL_01850	A0A553PBZ6	A0A553NF68	Uncharacterized protein.	Uncharacterized protein.	0.410
TCAL_00641	TCAL_01862	A0A553PBZ6	A0A553NDT1	Uncharacterized protein.	Uncharacterized protein.	0.410
TCAL_00641	TCAL_03202	A0A553PBZ6	A0A553N9X9	Uncharacterized protein.	Uncharacterized protein.	0.430
TCAL_00641	TCAL_08516	A0A553PBZ6	A0A553PL11	Uncharacterized protein.	Uncharacterized protein.	0.410
TCAL_00641	TCAL_10059	A0A553PBZ6	A0A553NXN7	Uncharacterized protein.	Uncharacterized protein.	0.410
TCAL_00641	TCAL_10078	A0A553PBZ6	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.421
TCAL_01110	TCAL_01393	A0A553P1B2	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_01110	TCAL_10078	A0A553P1B2	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.412