118 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_03687	Uncharacterized protein. (861 aa)
	TCAL_10078	Uncharacterized protein. (4291 aa)
	TCAL_08422	Uncharacterized protein. (7568 aa)
	TCAL_01787	Uncharacterized protein. (1489 aa)
	TCAL_06251	Uncharacterized protein. (1722 aa)
	TCAL_03202	Uncharacterized protein. (2771 aa)
	TCAL_13413	Uncharacterized protein. (307 aa)
	TCAL_02628	Uncharacterized protein. (2859 aa)
	TCAL_01862	Uncharacterized protein. (1390 aa)
	TCAL_00430	Uncharacterized protein. (992 aa)
	TCAL_01850	Uncharacterized protein. (1298 aa)
	TCAL_04008	Uncharacterized protein. (1255 aa)
	TCAL_17351	Ig-like domain-containing protein. (102 aa)
	TCAL_13929	Uncharacterized protein. (377 aa)
	TCAL_02739	Uncharacterized protein. (1500 aa)
	TCAL_05876	Uncharacterized protein. (227 aa)
	TCAL_05178	Ig-like domain-containing protein. (205 aa)
	TCAL_05279	Ig-like domain-containing protein. (319 aa)
	TCAL_03459	Uncharacterized protein. (332 aa)
	TCAL_09078	Uncharacterized protein. (1222 aa)
	TCAL_04365	Uncharacterized protein. (2025 aa)
	TCAL_05961	Uncharacterized protein. (336 aa)
	TCAL_03099	Uncharacterized protein. (400 aa)
	TCAL_07226	Uncharacterized protein. (449 aa)
	TCAL_11794	Ig-like domain-containing protein. (169 aa)
	TCAL_06422	Uncharacterized protein. (433 aa)
	TCAL_03447	Uncharacterized protein. (1320 aa)
	TCAL_16964	Ig-like domain-containing protein. (172 aa)
	TCAL_08023	Uncharacterized protein. (429 aa)
	TCAL_08054	Uncharacterized protein. (478 aa)
	TCAL_10467	Uncharacterized protein. (860 aa)
	TCAL_05174	Uncharacterized protein. (1503 aa)
	TCAL_09353	Uncharacterized protein. (1032 aa)
	TCAL_01401	Uncharacterized protein. (2148 aa)
	TCAL_04690	Uncharacterized protein. (883 aa)
	TCAL_03044	Receptor protein-tyrosine kinase. (1331 aa)
	TCAL_12070	Uncharacterized protein. (703 aa)
	TCAL_01393	Uncharacterized protein. (934 aa)
	TCAL_07630	Uncharacterized protein. (1355 aa)
	TCAL_13504	Uncharacterized protein. (342 aa)
	TCAL_13502	Uncharacterized protein. (298 aa)
	TCAL_01222	Uncharacterized protein. (911 aa)
	TCAL_10059	Uncharacterized protein. (9067 aa)
	TCAL_17251	Ig-like domain-containing protein. (224 aa)
	TCAL_11549	Ig-like domain-containing protein. (872 aa)
	TCAL_13185	Ig-like domain-containing protein. (221 aa)
	TCAL_13186	Uncharacterized protein. (255 aa)
	TCAL_02383	Uncharacterized protein. (926 aa)
	TCAL_06538	Uncharacterized protein. (320 aa)
	TCAL_04830	Uncharacterized protein. (1994 aa)
	TCAL_01236	Uncharacterized protein. (1434 aa)
	TCAL_02809	Ig-like domain-containing protein. (128 aa)
	TCAL_00258	Uncharacterized protein. (1383 aa)
	TCAL_00282	Uncharacterized protein. (1184 aa)
	TCAL_08434	Ig-like domain-containing protein. (202 aa)
	TCAL_12237	Uncharacterized protein. (1425 aa)
	TCAL_03115	Uncharacterized protein. (1454 aa)
	TCAL_11457	Uncharacterized protein. (276 aa)
	TCAL_06727	Uncharacterized protein. (1031 aa)
	TCAL_06515	Uncharacterized protein. (766 aa)
	TCAL_01156	Uncharacterized protein. (947 aa)
	TCAL_05465	Uncharacterized protein. (2424 aa)
	TCAL_01579	Ig-like domain-containing protein. (1275 aa)
	TCAL_05822	Ig-like domain-containing protein. (1014 aa)
	TCAL_01521	Uncharacterized protein. (669 aa)
	TCAL_12635	Uncharacterized protein. (907 aa)
	TCAL_08537	Uncharacterized protein. (1790 aa)
	TCAL_10798	Uncharacterized protein. (322 aa)
	TCAL_04520	Uncharacterized protein. (1259 aa)
	TCAL_07500	Uncharacterized protein. (303 aa)
	TCAL_04975	Uncharacterized protein. (1593 aa)
	TCAL_13859	Uncharacterized protein. (266 aa)
	TCAL_00639	Uncharacterized protein. (2463 aa)
	TCAL_11864	Uncharacterized protein. (2009 aa)
	TCAL_03866	Ig-like domain-containing protein. (183 aa)
	TCAL_10687	Uncharacterized protein. (897 aa)
	TCAL_07594	Uncharacterized protein. (522 aa)
	TCAL_07591	Uncharacterized protein. (911 aa)
	TCAL_07590	Uncharacterized protein. (509 aa)
	TCAL_03833	Uncharacterized protein. (731 aa)
	TCAL_00066	Uncharacterized protein. (558 aa)
	TCAL_08545	Uncharacterized protein. (335 aa)
	TCAL_07616	Uncharacterized protein. (494 aa)
	TCAL_07612	Uncharacterized protein. (728 aa)
	TCAL_15340	Uncharacterized protein. (519 aa)
	TCAL_01681	Uncharacterized protein. (1060 aa)
	TCAL_14387	Ig-like domain-containing protein. (155 aa)
	TCAL_06809	Uncharacterized protein. (447 aa)
	TCAL_13788	Uncharacterized protein. (475 aa)
	TCAL_12741	Uncharacterized protein. (1440 aa)
	TCAL_12442	Uncharacterized protein. (462 aa)
	TCAL_12443	Uncharacterized protein. (503 aa)
	TCAL_11690	Uncharacterized protein. (1616 aa)
	TCAL_15402	Uncharacterized protein. (467 aa)
	TCAL_08514	Uncharacterized protein. (380 aa)
	TCAL_08516	Uncharacterized protein. (1549 aa)
	TCAL_08987	Uncharacterized protein. (1201 aa)
	TCAL_06906	Uncharacterized protein. (477 aa)
	TCAL_12225	Uncharacterized protein. (1030 aa)
	TCAL_16666	Uncharacterized protein. (216 aa)
	TCAL_06811	Uncharacterized protein. (544 aa)
	TCAL_06812	Uncharacterized protein. (534 aa)
	TCAL_10910	Uncharacterized protein. (1022 aa)
	TCAL_04993	Uncharacterized protein. (1614 aa)
	TCAL_12149	Uncharacterized protein. (627 aa)
	TCAL_15286	Ig-like domain-containing protein. (143 aa)
	TCAL_09303	Uncharacterized protein. (361 aa)
	TCAL_06182	Uncharacterized protein. (505 aa)
	TCAL_07581	Uncharacterized protein. (1818 aa)
	TCAL_07587	Uncharacterized protein. (4069 aa)
	TCAL_07740	Uncharacterized protein. (428 aa)
	TCAL_12654	Uncharacterized protein. (318 aa)
	TCAL_13219	Uncharacterized protein. (596 aa)
	TCAL_14790	Ig-like domain-containing protein. (159 aa)
	TCAL_12994	Uncharacterized protein. (339 aa)
	TCAL_07549	Uncharacterized protein. (3569 aa)
	TCAL_13263	Uncharacterized protein. (391 aa)
	TCAL_04329	Uncharacterized protein. (1384 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00258	TCAL_01393	A0A553P240	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00258	TCAL_10078	A0A553P240	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00282	TCAL_01393	A0A553P282	A0A553NUX3	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00282	TCAL_06422	A0A553P282	A0A553NQU3	Uncharacterized protein.	Uncharacterized protein.	0.447
TCAL_00282	TCAL_06538	A0A553P282	A0A553NYR3	Uncharacterized protein.	Uncharacterized protein.	0.593
TCAL_00282	TCAL_07226	A0A553P282	A0A553NQK8	Uncharacterized protein.	Uncharacterized protein.	0.424
TCAL_00282	TCAL_08054	A0A553P282	A0A553NR00	Uncharacterized protein.	Uncharacterized protein.	0.449
TCAL_00282	TCAL_08514	A0A553P282	A0A553PL02	Uncharacterized protein.	Uncharacterized protein.	0.589
TCAL_00282	TCAL_10078	A0A553P282	A0A553N6Y6	Uncharacterized protein.	Uncharacterized protein.	0.412
TCAL_00639	TCAL_01850	A0A553PDR4	A0A553NF68	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_01862	A0A553PDR4	A0A553NDT1	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_07630	A0A553PDR4	A0A553NVW3	Uncharacterized protein.	Uncharacterized protein.	0.501
TCAL_00639	TCAL_08516	A0A553PDR4	A0A553PL11	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_10059	A0A553PDR4	A0A553NXN7	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_12994	A0A553PDR4	A0A553PPK1	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_00639	TCAL_13185	A0A553PDR4	A0A553NXY0	Uncharacterized protein.	Ig-like domain-containing protein.	0.576
TCAL_00639	TCAL_13186	A0A553PDR4	A0A553NXY5	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_01156	TCAL_07549	A0A553P4N2	A0A553PQL8	Uncharacterized protein.	Uncharacterized protein.	0.462
TCAL_01222	TCAL_01850	A0A553NXJ6	A0A553NF68	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_01222	TCAL_01862	A0A553NXJ6	A0A553NDT1	Uncharacterized protein.	Uncharacterized protein.	0.576