36 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_03759	Uncharacterized protein. (287 aa)
	TCAL_03459	Uncharacterized protein. (332 aa)
	TCAL_13685	Uncharacterized protein. (335 aa)
	TCAL_06422	Uncharacterized protein. (433 aa)
	TCAL_03447	Uncharacterized protein. (1320 aa)
	TCAL_08023	Uncharacterized protein. (429 aa)
	TCAL_08024	Uncharacterized protein. (381 aa)
	TCAL_05174	Uncharacterized protein. (1503 aa)
	TCAL_06934	Ig-like domain-containing protein. (240 aa)
	TCAL_07630	Uncharacterized protein. (1355 aa)
	TCAL_13504	Uncharacterized protein. (342 aa)
	TCAL_09632	Uncharacterized protein. (393 aa)
	TCAL_04830	Uncharacterized protein. (1994 aa)
	TCAL_08712	Uncharacterized protein. (359 aa)
	TCAL_11940	Uncharacterized protein. (962 aa)
	TCAL_03135	Uncharacterized protein. (175 aa)
	TCAL_01071	Uncharacterized protein. (975 aa)
	TCAL_06722	Uncharacterized protein. (789 aa)
	TCAL_17139	Ig-like domain-containing protein. (209 aa)
	TCAL_01521	Uncharacterized protein. (669 aa)
	TCAL_08537	Uncharacterized protein. (1790 aa)
	TCAL_09495	Uncharacterized protein. (404 aa)
	TCAL_04970	Ig-like domain-containing protein. (334 aa)
	TCAL_14381	Ig-like domain-containing protein. (264 aa)
	TCAL_09318	Uncharacterized protein. (989 aa)
	TCAL_08514	Uncharacterized protein. (380 aa)
	TCAL_08518	Uncharacterized protein. (461 aa)
	TCAL_06634	Uncharacterized protein. (1137 aa)
	TCAL_07581	Uncharacterized protein. (1818 aa)
	TCAL_02129	Uncharacterized protein. (446 aa)
	TCAL_09271	Uncharacterized protein. (365 aa)
	TCAL_08428	Uncharacterized protein. (305 aa)
	TCAL_01787	Uncharacterized protein. (1489 aa)
	TCAL_15249	Uncharacterized protein. (342 aa)
	TCAL_02289	Uncharacterized protein. (283 aa)
	TCAL_05246	Uncharacterized protein. (351 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01071	TCAL_06422	A0A553P2F9	A0A553NQU3	Uncharacterized protein.	Uncharacterized protein.	0.442
TCAL_02129	TCAL_06722	A0A553N6P5	A0A553P4F4	Uncharacterized protein.	Uncharacterized protein.	0.415
TCAL_02129	TCAL_09318	A0A553N6P5	A0A553PKD9	Uncharacterized protein.	Uncharacterized protein.	0.429
TCAL_02129	TCAL_11940	A0A553N6P5	A0A553P1J9	Uncharacterized protein.	Uncharacterized protein.	0.425
TCAL_04830	TCAL_07630	A0A553NZ92	A0A553NVW3	Uncharacterized protein.	Uncharacterized protein.	0.533
TCAL_04970	TCAL_06422	A0A553PD13	A0A553NQU3	Ig-like domain-containing protein.	Uncharacterized protein.	0.463
TCAL_06422	TCAL_01071	A0A553NQU3	A0A553P2F9	Uncharacterized protein.	Uncharacterized protein.	0.442
TCAL_06422	TCAL_04970	A0A553NQU3	A0A553PD13	Uncharacterized protein.	Ig-like domain-containing protein.	0.463
TCAL_06422	TCAL_06722	A0A553NQU3	A0A553P4F4	Uncharacterized protein.	Uncharacterized protein.	0.428
TCAL_06422	TCAL_09318	A0A553NQU3	A0A553PKD9	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_06422	TCAL_11940	A0A553NQU3	A0A553P1J9	Uncharacterized protein.	Uncharacterized protein.	0.458
TCAL_06722	TCAL_02129	A0A553P4F4	A0A553N6P5	Uncharacterized protein.	Uncharacterized protein.	0.415
TCAL_06722	TCAL_06422	A0A553P4F4	A0A553NQU3	Uncharacterized protein.	Uncharacterized protein.	0.428
TCAL_06722	TCAL_08514	A0A553P4F4	A0A553PL02	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_06722	TCAL_08712	A0A553P4F4	A0A553P0J8	Uncharacterized protein.	Uncharacterized protein.	0.472
TCAL_06722	TCAL_09495	A0A553P4F4	A0A553PC33	Uncharacterized protein.	Uncharacterized protein.	0.410
TCAL_07630	TCAL_04830	A0A553NVW3	A0A553NZ92	Uncharacterized protein.	Uncharacterized protein.	0.533
TCAL_08514	TCAL_06722	A0A553PL02	A0A553P4F4	Uncharacterized protein.	Uncharacterized protein.	0.576
TCAL_08514	TCAL_09318	A0A553PL02	A0A553PKD9	Uncharacterized protein.	Uncharacterized protein.	0.566
TCAL_08514	TCAL_11940	A0A553PL02	A0A553P1J9	Uncharacterized protein.	Uncharacterized protein.	0.572