20 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_09271	Uncharacterized protein. (365 aa)
	TCAL_07549	Uncharacterized protein. (3569 aa)
	TCAL_06812	Uncharacterized protein. (534 aa)
	TCAL_01681	Uncharacterized protein. (1060 aa)
	TCAL_00066	Uncharacterized protein. (558 aa)
	TCAL_07505	Ig-like domain-containing protein. (227 aa)
	TCAL_08537	Uncharacterized protein. (1790 aa)
	TCAL_02238	Ig-like domain-containing protein. (1381 aa)
	TCAL_01521	Uncharacterized protein. (669 aa)
	TCAL_01156	Uncharacterized protein. (947 aa)
	TCAL_12240	Uncharacterized protein. (708 aa)
	TCAL_11263	Uncharacterized protein. (902 aa)
	TCAL_01071	Uncharacterized protein. (975 aa)
	TCAL_04738	Uncharacterized protein. (1183 aa)
	TCAL_09632	Uncharacterized protein. (393 aa)
	TCAL_03044	Receptor protein-tyrosine kinase. (1331 aa)
	TCAL_15876	Ig-like domain-containing protein. (257 aa)
	TCAL_08023	Uncharacterized protein. (429 aa)
	TCAL_04365	Uncharacterized protein. (2025 aa)
	TCAL_05884	Uncharacterized protein. (788 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01156	TCAL_07549	A0A553P4N2	A0A553PQL8	Uncharacterized protein.	Uncharacterized protein.	0.462
TCAL_01681	TCAL_05884	A0A553PJE3	A0A553NQ08	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_02238	TCAL_04365	A0A553P8L6	A0A553NQ31	Ig-like domain-containing protein.	Uncharacterized protein.	0.420
TCAL_03044	TCAL_07549	A0A553NTT4	A0A553PQL8	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.462
TCAL_03044	TCAL_12240	A0A553NTT4	A0A553P3N1	Receptor protein-tyrosine kinase.	Uncharacterized protein.	0.442
TCAL_04365	TCAL_02238	A0A553NQ31	A0A553P8L6	Uncharacterized protein.	Ig-like domain-containing protein.	0.420
TCAL_05884	TCAL_01681	A0A553NQ08	A0A553PJE3	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_07549	TCAL_01156	A0A553PQL8	A0A553P4N2	Uncharacterized protein.	Uncharacterized protein.	0.462
TCAL_07549	TCAL_03044	A0A553PQL8	A0A553NTT4	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.462
TCAL_12240	TCAL_03044	A0A553P3N1	A0A553NTT4	Uncharacterized protein.	Receptor protein-tyrosine kinase.	0.442