39 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_12186	Ig-like domain-containing protein. (296 aa)
	TCAL_09057	Uncharacterized protein. (779 aa)
	TCAL_03134	Uncharacterized protein. (969 aa)
	TCAL_01110	Uncharacterized protein. (945 aa)
	TCAL_15047	C2-set_2 domain-containing protein. (428 aa)
	TCAL_04760	Uncharacterized protein. (1106 aa)
	TCAL_03969	Uncharacterized protein. (843 aa)
	TCAL_03405	Uncharacterized protein. (975 aa)
	TCAL_11263	Uncharacterized protein. (902 aa)
	TCAL_03115	Uncharacterized protein. (1454 aa)
	TCAL_09601	Uncharacterized protein. (585 aa)
	TCAL_01071	Uncharacterized protein. (975 aa)
	TCAL_00282	Uncharacterized protein. (1184 aa)
	TCAL_00258	Uncharacterized protein. (1383 aa)
	TCAL_06727	Uncharacterized protein. (1031 aa)
	TCAL_06514	Uncharacterized protein. (691 aa)
	TCAL_06515	Uncharacterized protein. (766 aa)
	TCAL_06722	Uncharacterized protein. (789 aa)
	TCAL_12672	Uncharacterized protein. (361 aa)
	TCAL_03833	Uncharacterized protein. (731 aa)
	TCAL_01689	Ig-like domain-containing protein. (416 aa)
	TCAL_11905	Uncharacterized protein. (282 aa)
	TCAL_08428	Uncharacterized protein. (305 aa)
	TCAL_06294	Uncharacterized protein. (474 aa)
	TCAL_16651	Ig-like domain-containing protein; Cadherins are calcium-dependent cell adhesion proteins. (433 aa)
	TCAL_16592	Ig-like domain-containing protein. (135 aa)
	TCAL_02084	Uncharacterized protein. (677 aa)
	TCAL_16652	Uncharacterized protein. (666 aa)
	TCAL_12216	Uncharacterized protein. (813 aa)
	TCAL_16484	C2-set_2 domain-containing protein. (457 aa)
	TCAL_15046	C2-set_2 domain-containing protein. (470 aa)
	TCAL_13120	Ig-like domain-containing protein. (272 aa)
	TCAL_09318	Uncharacterized protein. (989 aa)
	TCAL_13220	Ig-like domain-containing protein. (80 aa)
	TCAL_01716	Ig-like domain-containing protein. (506 aa)
	TCAL_01731	C2-set_2 domain-containing protein. (306 aa)
	TCAL_08518	Uncharacterized protein. (461 aa)
	TCAL_06634	Uncharacterized protein. (1137 aa)
	TCAL_09465	Ig-like domain-containing protein. (334 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00258	TCAL_02084	A0A553P240	A0A553NCL5	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00258	TCAL_12216	A0A553P240	A0A553NSH7	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00282	TCAL_08518	A0A553P282	A0A553PL09	Uncharacterized protein.	Uncharacterized protein.	0.403
TCAL_02084	TCAL_00258	A0A553NCL5	A0A553P240	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_02084	TCAL_03115	A0A553NCL5	A0A553P3I8	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_02084	TCAL_12672	A0A553NCL5	A0A553P4P8	Uncharacterized protein.	Uncharacterized protein.	0.701
TCAL_03115	TCAL_02084	A0A553P3I8	A0A553NCL5	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_03115	TCAL_12216	A0A553P3I8	A0A553NSH7	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_03134	TCAL_06514	A0A553P1N9	A0A553P4F1	Uncharacterized protein.	Uncharacterized protein.	0.422
TCAL_03134	TCAL_06515	A0A553P1N9	A0A553P4F3	Uncharacterized protein.	Uncharacterized protein.	0.457
TCAL_06514	TCAL_03134	A0A553P4F1	A0A553P1N9	Uncharacterized protein.	Uncharacterized protein.	0.422
TCAL_06515	TCAL_03134	A0A553P4F3	A0A553P1N9	Uncharacterized protein.	Uncharacterized protein.	0.457
TCAL_08518	TCAL_00282	A0A553PL09	A0A553P282	Uncharacterized protein.	Uncharacterized protein.	0.403
TCAL_08518	TCAL_09601	A0A553PL09	A0A553P2V6	Uncharacterized protein.	Uncharacterized protein.	0.410
TCAL_08518	TCAL_11263	A0A553PL09	A0A553P3M4	Uncharacterized protein.	Uncharacterized protein.	0.413
TCAL_09601	TCAL_08518	A0A553P2V6	A0A553PL09	Uncharacterized protein.	Uncharacterized protein.	0.410
TCAL_11263	TCAL_08518	A0A553P3M4	A0A553PL09	Uncharacterized protein.	Uncharacterized protein.	0.413
TCAL_12216	TCAL_00258	A0A553NSH7	A0A553P240	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_12216	TCAL_03115	A0A553NSH7	A0A553P3I8	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_12216	TCAL_12672	A0A553NSH7	A0A553P4P8	Uncharacterized protein.	Uncharacterized protein.	0.701