17 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_01878	Uncharacterized protein. (2063 aa)
	TCAL_16291	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (457 aa)
	TCAL_00423	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1005 aa)
	TCAL_05596	Signal transducer and activator of transcription. (817 aa)
	TCAL_04663	Signal transducer and activator of transcription. (610 aa)
	TCAL_10021	Uncharacterized protein. (1096 aa)
	TCAL_15008	Ig-like domain-containing protein. (154 aa)
	TCAL_11614	Uncharacterized protein. (1281 aa)
	TCAL_11613	Uncharacterized protein. (1361 aa)
	TCAL_12498	Uncharacterized protein. (963 aa)
	TCAL_00190	Uncharacterized protein. (1118 aa)
	TCAL_01880	KIX domain-containing protein. (149 aa)
	TCAL_00691	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1278 aa)
	TCAL_00661	Uncharacterized protein. (459 aa)
	TCAL_03864	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (393 aa)
	TCAL_08001	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (437 aa)
	TCAL_10212	Uncharacterized protein. (907 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00190	TCAL_00423	A0A553P4F6	A0A553ND84	Uncharacterized protein.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.653
TCAL_00190	TCAL_00661	A0A553P4F6	A0A553PBV1	Uncharacterized protein.	Uncharacterized protein.	0.744
TCAL_00190	TCAL_00691	A0A553P4F6	A0A553PA63	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.653
TCAL_00190	TCAL_04663	A0A553P4F6	A0A553NTG2	Uncharacterized protein.	Signal transducer and activator of transcription.	0.625
TCAL_00190	TCAL_05596	A0A553P4F6	A0A553NEP6	Uncharacterized protein.	Signal transducer and activator of transcription.	0.625
TCAL_00190	TCAL_10021	A0A553P4F6	A0A553NX27	Uncharacterized protein.	Uncharacterized protein.	0.510
TCAL_00190	TCAL_11613	A0A553P4F6	A0A553NXV3	Uncharacterized protein.	Uncharacterized protein.	0.510
TCAL_00190	TCAL_11614	A0A553P4F6	A0A553NXV2	Uncharacterized protein.	Uncharacterized protein.	0.510
TCAL_00190	TCAL_12498	A0A553P4F6	A0A553P1I3	Uncharacterized protein.	Uncharacterized protein.	0.510
TCAL_00190	TCAL_15008	A0A553P4F6	A0A553NXH2	Uncharacterized protein.	Ig-like domain-containing protein.	0.510
TCAL_00423	TCAL_00190	A0A553ND84	A0A553P4F6	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.653
TCAL_00423	TCAL_00661	A0A553ND84	A0A553PBV1	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	Uncharacterized protein.	0.989
TCAL_00661	TCAL_00190	A0A553PBV1	A0A553P4F6	Uncharacterized protein.	Uncharacterized protein.	0.744
TCAL_00661	TCAL_00423	A0A553PBV1	A0A553ND84	Uncharacterized protein.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.989
TCAL_00661	TCAL_00691	A0A553PBV1	A0A553PA63	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.989
TCAL_00661	TCAL_04663	A0A553PBV1	A0A553NTG2	Uncharacterized protein.	Signal transducer and activator of transcription.	0.569
TCAL_00661	TCAL_05596	A0A553PBV1	A0A553NEP6	Uncharacterized protein.	Signal transducer and activator of transcription.	0.569
TCAL_00661	TCAL_10021	A0A553PBV1	A0A553NX27	Uncharacterized protein.	Uncharacterized protein.	0.454
TCAL_00661	TCAL_11613	A0A553PBV1	A0A553NXV3	Uncharacterized protein.	Uncharacterized protein.	0.454
TCAL_00661	TCAL_11614	A0A553PBV1	A0A553NXV2	Uncharacterized protein.	Uncharacterized protein.	0.454