15 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_08314	FERM domain-containing protein. (485 aa)
	TCAL_08711	Uncharacterized protein. (1837 aa)
	TCAL_12631	FERM domain-containing protein. (569 aa)
	TCAL_04830	Uncharacterized protein. (1994 aa)
	TCAL_07630	Uncharacterized protein. (1355 aa)
	TCAL_15145	Ig-like domain-containing protein. (153 aa)
	TCAL_10749	Uncharacterized protein. (836 aa)
	TCAL_06823	Uncharacterized protein. (861 aa)
	TCAL_10233	Uncharacterized protein. (991 aa)
	TCAL_09353	Uncharacterized protein. (1032 aa)
	TCAL_17351	Ig-like domain-containing protein. (102 aa)
	TCAL_09378	Mitogen-activated protein kinase. (456 aa)
	TCAL_07587	Uncharacterized protein. (4069 aa)
	TCAL_07586	Ig-like domain-containing protein. (190 aa)
	TCAL_14558	Uncharacterized protein. (587 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_04830	TCAL_07630	A0A553NZ92	A0A553NVW3	Uncharacterized protein.	Uncharacterized protein.	0.533
TCAL_04830	TCAL_09378	A0A553NZ92	A0A553PSP0	Uncharacterized protein.	Mitogen-activated protein kinase.	0.423
TCAL_04830	TCAL_15145	A0A553NZ92	A0A553NTX5	Uncharacterized protein.	Ig-like domain-containing protein.	0.533
TCAL_06823	TCAL_10749	A0A553NTG6	A0A553NTH5	Uncharacterized protein.	Uncharacterized protein.	0.646
TCAL_07586	TCAL_07587	A0A553PMA0	A0A553PMB3	Ig-like domain-containing protein.	Uncharacterized protein.	0.514
TCAL_07586	TCAL_07630	A0A553PMA0	A0A553NVW3	Ig-like domain-containing protein.	Uncharacterized protein.	0.533
TCAL_07586	TCAL_09378	A0A553PMA0	A0A553PSP0	Ig-like domain-containing protein.	Mitogen-activated protein kinase.	0.423
TCAL_07586	TCAL_15145	A0A553PMA0	A0A553NTX5	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.533
TCAL_07587	TCAL_07586	A0A553PMB3	A0A553PMA0	Uncharacterized protein.	Ig-like domain-containing protein.	0.514
TCAL_07587	TCAL_07630	A0A553PMB3	A0A553NVW3	Uncharacterized protein.	Uncharacterized protein.	0.533
TCAL_07587	TCAL_09378	A0A553PMB3	A0A553PSP0	Uncharacterized protein.	Mitogen-activated protein kinase.	0.423
TCAL_07587	TCAL_15145	A0A553PMB3	A0A553NTX5	Uncharacterized protein.	Ig-like domain-containing protein.	0.533
TCAL_07630	TCAL_04830	A0A553NVW3	A0A553NZ92	Uncharacterized protein.	Uncharacterized protein.	0.533
TCAL_07630	TCAL_07586	A0A553NVW3	A0A553PMA0	Uncharacterized protein.	Ig-like domain-containing protein.	0.533
TCAL_07630	TCAL_07587	A0A553NVW3	A0A553PMB3	Uncharacterized protein.	Uncharacterized protein.	0.533
TCAL_07630	TCAL_08314	A0A553NVW3	A0A553P9U7	Uncharacterized protein.	FERM domain-containing protein.	0.550
TCAL_07630	TCAL_08711	A0A553NVW3	A0A553P0J5	Uncharacterized protein.	Uncharacterized protein.	0.707
TCAL_07630	TCAL_09353	A0A553NVW3	A0A553NS96	Uncharacterized protein.	Uncharacterized protein.	0.736
TCAL_07630	TCAL_10233	A0A553NVW3	A0A553NSI6	Uncharacterized protein.	Uncharacterized protein.	0.736
TCAL_07630	TCAL_10749	A0A553NVW3	A0A553NTH5	Uncharacterized protein.	Uncharacterized protein.	0.773