67 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_06195	Uncharacterized protein. (385 aa)
	TCAL_16501	Ig-like domain-containing protein. (99 aa)
	TCAL_07618	Uncharacterized protein. (378 aa)
	TCAL_11882	Uncharacterized protein. (2026 aa)
	TCAL_13024	Uncharacterized protein. (463 aa)
	TCAL_00258	Uncharacterized protein. (1383 aa)
	TCAL_06073	CUB domain-containing protein. (413 aa)
	TCAL_12999	Uncharacterized protein. (256 aa)
	TCAL_13539	Uncharacterized protein. (300 aa)
	TCAL_13282	Uncharacterized protein. (385 aa)
	TCAL_03115	Uncharacterized protein. (1454 aa)
	TCAL_06514	Uncharacterized protein. (691 aa)
	TCAL_06515	Uncharacterized protein. (766 aa)
	TCAL_12673	Uncharacterized protein. (1044 aa)
	TCAL_13001	Uncharacterized protein. (427 aa)
	TCAL_12323	Uncharacterized protein. (405 aa)
	TCAL_12324	Uncharacterized protein. (348 aa)
	TCAL_16014	Uncharacterized protein. (276 aa)
	TCAL_09863	Uncharacterized protein. (427 aa)
	TCAL_10039	Uncharacterized protein. (549 aa)
	TCAL_16686	Uncharacterized protein. (245 aa)
	TCAL_15291	Uncharacterized protein. (340 aa)
	TCAL_11893	Uncharacterized protein. (726 aa)
	TCAL_01681	Uncharacterized protein. (1060 aa)
	TCAL_03833	Uncharacterized protein. (731 aa)
	TCAL_11358	Uncharacterized protein. (314 aa)
	TCAL_10137	PHB domain-containing protein. (285 aa)
	TCAL_08352	Uncharacterized protein. (866 aa)
	TCAL_15629	Uncharacterized protein. (261 aa)
	TCAL_08498	Uncharacterized protein. (317 aa)
	TCAL_15571	Uncharacterized protein. (177 aa)
	TCAL_15612	Uncharacterized protein. (265 aa)
	TCAL_10437	Uncharacterized protein. (326 aa)
	TCAL_12359	Uncharacterized protein. (202 aa)
	TCAL_07390	Uncharacterized protein. (318 aa)
	TCAL_09003	CUB domain-containing protein. (273 aa)
	TCAL_11850	CUB domain-containing protein. (359 aa)
	TCAL_13449	Uncharacterized protein. (229 aa)
	TCAL_08858	Uncharacterized protein. (326 aa)
	TCAL_15429	Uncharacterized protein. (109 aa)
	TCAL_14482	Uncharacterized protein. (230 aa)
	TCAL_13390	Uncharacterized protein. (279 aa)
	TCAL_12284	Uncharacterized protein. (308 aa)
	TCAL_16248	Uncharacterized protein. (229 aa)
	TCAL_14294	PHB domain-containing protein. (680 aa)
	TCAL_04634	PHB domain-containing protein. (324 aa)
	TCAL_13110	PHB domain-containing protein. (289 aa)
	TCAL_07139	PHB domain-containing protein. (488 aa)
	TCAL_11835	PHB domain-containing protein. (376 aa)
	TCAL_02084	Uncharacterized protein. (677 aa)
	TCAL_02603	PHB domain-containing protein. (313 aa)
	TCAL_02604	PHB domain-containing protein. (282 aa)
	TCAL_02605	PHB domain-containing protein. (307 aa)
	TCAL_02602	PHB domain-containing protein. (312 aa)
	TCAL_06264	PHB domain-containing protein. (338 aa)
	TCAL_13592	FH2 domain-containing protein. (1075 aa)
	TCAL_00406	PHB domain-containing protein. (475 aa)
	TCAL_05141	PHB domain-containing protein. (406 aa)
	TCAL_13533	PHB domain-containing protein. (367 aa)
	TCAL_04633	PHB domain-containing protein. (311 aa)
	TCAL_04027	PHB domain-containing protein. (337 aa)
	TCAL_02637	PHB domain-containing protein. (200 aa)
	TCAL_11131	Uncharacterized protein. (543 aa)
	TCAL_04361	Uncharacterized protein. (394 aa)
	TCAL_05884	Uncharacterized protein. (788 aa)
	TCAL_12216	Uncharacterized protein. (813 aa)
	TCAL_04695	PHB domain-containing protein. (449 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00258	TCAL_02084	A0A553P240	A0A553NCL5	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00258	TCAL_04361	A0A553P240	A0A553NQ06	Uncharacterized protein.	Uncharacterized protein.	0.661
TCAL_00258	TCAL_05884	A0A553P240	A0A553NQ08	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00258	TCAL_10039	A0A553P240	A0A553PNF6	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_00258	TCAL_11131	A0A553P240	A0A553NPH2	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_00258	TCAL_12216	A0A553P240	A0A553NSH7	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_00258	TCAL_16501	A0A553P240	A0A553NUD9	Uncharacterized protein.	Ig-like domain-containing protein.	0.727
TCAL_01681	TCAL_02084	A0A553PJE3	A0A553NCL5	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_01681	TCAL_04361	A0A553PJE3	A0A553NQ06	Uncharacterized protein.	Uncharacterized protein.	0.450
TCAL_01681	TCAL_05884	A0A553PJE3	A0A553NQ08	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_01681	TCAL_12216	A0A553PJE3	A0A553NSH7	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_01681	TCAL_16501	A0A553PJE3	A0A553NUD9	Uncharacterized protein.	Ig-like domain-containing protein.	0.524
TCAL_02084	TCAL_00258	A0A553NCL5	A0A553P240	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_02084	TCAL_01681	A0A553NCL5	A0A553PJE3	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_02084	TCAL_03115	A0A553NCL5	A0A553P3I8	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_02084	TCAL_04361	A0A553NCL5	A0A553NQ06	Uncharacterized protein.	Uncharacterized protein.	0.633
TCAL_02084	TCAL_08352	A0A553NCL5	A0A553PF91	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_02084	TCAL_12673	A0A553NCL5	A0A553P4J1	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_03115	TCAL_02084	A0A553P3I8	A0A553NCL5	Uncharacterized protein.	Uncharacterized protein.	0.727
TCAL_03115	TCAL_04361	A0A553P3I8	A0A553NQ06	Uncharacterized protein.	Uncharacterized protein.	0.661