85 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_01298	Uncharacterized protein. (376 aa)
	TCAL_14971	Uncharacterized protein. (352 aa)
	TCAL_04180	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (412 aa)
	TCAL_03690	Uncharacterized protein. (1043 aa)
	TCAL_01780	Calponin-homology (CH) domain-containing protein. (737 aa)
	TCAL_09137	Uncharacterized protein. (111 aa)
	TCAL_09104	Uncharacterized protein. (314 aa)
	TCAL_16246	Uncharacterized protein. (487 aa)
	TCAL_03182	Uncharacterized protein; Belongs to the integrin alpha chain family. (966 aa)
	TCAL_00471	Uncharacterized protein. (376 aa)
	TCAL_00460	Uncharacterized protein. (400 aa)
	TCAL_00470	Uncharacterized protein. (376 aa)
	TCAL_03642	Uncharacterized protein. (722 aa)
	TCAL_11501	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (519 aa)
	TCAL_00890	Uncharacterized protein. (3707 aa)
	TCAL_00378	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (143 aa)
	TCAL_07260	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (221 aa)
	TCAL_03582	AP complex subunit beta. (942 aa)
	TCAL_07699	Uncharacterized protein; Belongs to the actin family. (376 aa)
	TCAL_05247	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (388 aa)
	TCAL_05507	Uncharacterized protein. (1339 aa)
	TCAL_03823	Uncharacterized protein; Belongs to the actin family. (439 aa)
	TCAL_09398	Uncharacterized protein. (2417 aa)
	TCAL_05093	Uncharacterized protein. (744 aa)
	TCAL_01394	Uncharacterized protein; Belongs to the peptidase S1 family. (835 aa)
	TCAL_09872	Uncharacterized protein. (376 aa)
	TCAL_03259	Uncharacterized protein. (1228 aa)
	TCAL_01222	Uncharacterized protein. (911 aa)
	TCAL_06538	Uncharacterized protein. (320 aa)
	TCAL_08726	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1380 aa)
	TCAL_08712	Uncharacterized protein. (359 aa)
	TCAL_11449	Uncharacterized protein. (529 aa)
	TCAL_12631	FERM domain-containing protein. (569 aa)
	TCAL_05303	Uncharacterized protein. (2577 aa)
	TCAL_01127	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (218 aa)
	TCAL_12368	ANK_REP_REGION domain-containing protein. (630 aa)
	TCAL_13033	Uncharacterized protein. (947 aa)
	TCAL_03153	Uncharacterized protein. (484 aa)
	TCAL_01159	ANK_REP_REGION domain-containing protein. (268 aa)
	TCAL_14086	ANK_REP_REGION domain-containing protein. (315 aa)
	TCAL_13620	Uncharacterized protein. (323 aa)
	TCAL_02251	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. (1005 aa)
	TCAL_14387	Ig-like domain-containing protein. (155 aa)
	TCAL_15768	Uncharacterized protein. (313 aa)
	TCAL_08740	Uncharacterized protein. (1084 aa)
	TCAL_13760	Uncharacterized protein. (298 aa)
	TCAL_08314	FERM domain-containing protein. (485 aa)
	TCAL_07115	Integrin beta; Belongs to the integrin beta chain family. (825 aa)
	TCAL_08537	Uncharacterized protein. (1790 aa)
	TCAL_01336	Uncharacterized protein. (515 aa)
	TCAL_00709	Integrin beta. (870 aa)
	TCAL_01299	Uncharacterized protein. (575 aa)
	TCAL_00115	Abhydrolase_2 domain-containing protein. (243 aa)
	TCAL_08524	Abhydrolase_2 domain-containing protein. (248 aa)
	TCAL_15340	Uncharacterized protein. (519 aa)
	TCAL_06809	Uncharacterized protein. (447 aa)
	TCAL_13788	Uncharacterized protein. (475 aa)
	TCAL_09312	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1004 aa)
	TCAL_12442	Uncharacterized protein. (462 aa)
	TCAL_12443	Uncharacterized protein. (503 aa)
	TCAL_08514	Uncharacterized protein. (380 aa)
	TCAL_16666	Uncharacterized protein. (216 aa)
	TCAL_06811	Uncharacterized protein. (544 aa)
	TCAL_06812	Uncharacterized protein. (534 aa)
	TCAL_12149	Uncharacterized protein. (627 aa)
	TCAL_06630	ANK_REP_REGION domain-containing protein. (1837 aa)
	TCAL_15286	Ig-like domain-containing protein. (143 aa)
	TCAL_09303	Uncharacterized protein. (361 aa)
	TCAL_06182	Uncharacterized protein. (505 aa)
	TCAL_07740	Uncharacterized protein. (428 aa)
	TCAL_12654	Uncharacterized protein. (318 aa)
	TCAL_13219	Uncharacterized protein. (596 aa)
	TCAL_05813	Uncharacterized protein. (735 aa)
	TCAL_11668	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (431 aa)
	TCAL_12668	Integrin beta; Belongs to the integrin beta chain family. (809 aa)
	TCAL_08105	ANK_REP_REGION domain-containing protein. (592 aa)
	TCAL_12882	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1816 aa)
	TCAL_12986	Uncharacterized protein. (665 aa)
	TCAL_13704	Uncharacterized protein. (655 aa)
	TCAL_09889	Uncharacterized protein. (2042 aa)
	TCAL_09014	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (139 aa)
	TCAL_03972	Uncharacterized protein. (145 aa)
	TCAL_06305	Uncharacterized protein. (382 aa)
	TCAL_09891	Uncharacterized protein. (2554 aa)
	TCAL_14493	ANK_REP_REGION domain-containing protein. (261 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00378	TCAL_00460	A0A553NEJ1	A0A553NB16	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.659
TCAL_00378	TCAL_01127	A0A553NEJ1	A0A553P2V8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.856
TCAL_00378	TCAL_02251	A0A553NEJ1	A0A553P8A2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.995
TCAL_00378	TCAL_03582	A0A553NEJ1	A0A553NES8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit beta.	0.999
TCAL_00378	TCAL_03690	A0A553NEJ1	A0A553N8Z9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Uncharacterized protein.	0.683
TCAL_00378	TCAL_08726	A0A553NEJ1	A0A553NYR9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.946
TCAL_00378	TCAL_09014	A0A553NEJ1	A0A553PSM2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.856
TCAL_00378	TCAL_11501	A0A553NEJ1	A0A553NBF2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.622
TCAL_00378	TCAL_11668	A0A553NEJ1	A0A553PPA3	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.999
TCAL_00460	TCAL_00378	A0A553NB16	A0A553NEJ1	Uncharacterized protein.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.659
TCAL_00460	TCAL_01127	A0A553NB16	A0A553P2V8	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.571
TCAL_00460	TCAL_03582	A0A553NB16	A0A553NES8	Uncharacterized protein.	AP complex subunit beta.	0.642
TCAL_00460	TCAL_03690	A0A553NB16	A0A553N8Z9	Uncharacterized protein.	Uncharacterized protein.	0.943
TCAL_00460	TCAL_08726	A0A553NB16	A0A553NYR9	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.729
TCAL_00460	TCAL_09014	A0A553NB16	A0A553PSM2	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.571
TCAL_00460	TCAL_11501	A0A553NB16	A0A553NBF2	Uncharacterized protein.	Dynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.902
TCAL_00460	TCAL_11668	A0A553NB16	A0A553PPA3	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.720
TCAL_00470	TCAL_00709	A0A553NB20	A0A553PCM9	Uncharacterized protein.	Integrin beta.	0.448
TCAL_00470	TCAL_07115	A0A553NB20	A0A553PAT9	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.448
TCAL_00470	TCAL_08726	A0A553NB20	A0A553NYR9	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.430