14 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_11614	Uncharacterized protein. (1281 aa)
	TCAL_11613	Uncharacterized protein. (1361 aa)
	TCAL_10691	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (298 aa)
	TCAL_17156	Uncharacterized protein. (459 aa)
	TCAL_12498	Uncharacterized protein. (963 aa)
	TCAL_09462	DUF4203 domain-containing protein. (318 aa)
	TCAL_00418	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (377 aa)
	TCAL_10335	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (605 aa)
	TCAL_03081	Uncharacterized protein. (2160 aa)
	TCAL_10758	V-SNARE coiled-coil homology domain-containing protein. (156 aa)
	TCAL_03071	Uncharacterized protein. (204 aa)
	TCAL_05086	t-SNARE coiled-coil homology domain-containing protein. (661 aa)
	TCAL_10021	Uncharacterized protein. (1096 aa)
	TCAL_15008	Ig-like domain-containing protein. (154 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00418	TCAL_03071	A0A553NAZ6	A0A553NV95	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.841
TCAL_00418	TCAL_10335	A0A553NAZ6	A0A553NCQ3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.933
TCAL_00418	TCAL_10758	A0A553NAZ6	A0A553NTD9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.938
TCAL_00418	TCAL_17156	A0A553NAZ6	A0A553P4I1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.841
TCAL_03071	TCAL_00418	A0A553NV95	A0A553NAZ6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.841
TCAL_03071	TCAL_05086	A0A553NV95	A0A553NVI0	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.841
TCAL_03071	TCAL_10335	A0A553NV95	A0A553NCQ3	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.916
TCAL_03071	TCAL_10691	A0A553NV95	A0A553P009	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.841
TCAL_03071	TCAL_10758	A0A553NV95	A0A553NTD9	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.960
TCAL_05086	TCAL_03071	A0A553NVI0	A0A553NV95	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.841
TCAL_05086	TCAL_10335	A0A553NVI0	A0A553NCQ3	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.933
TCAL_05086	TCAL_10758	A0A553NVI0	A0A553NTD9	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.938
TCAL_05086	TCAL_17156	A0A553NVI0	A0A553P4I1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.841
TCAL_10335	TCAL_00418	A0A553NCQ3	A0A553NAZ6	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.933
TCAL_10335	TCAL_03071	A0A553NCQ3	A0A553NV95	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.916
TCAL_10335	TCAL_05086	A0A553NCQ3	A0A553NVI0	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	t-SNARE coiled-coil homology domain-containing protein.	0.933
TCAL_10335	TCAL_10691	A0A553NCQ3	A0A553P009	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.933
TCAL_10335	TCAL_10758	A0A553NCQ3	A0A553NTD9	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	V-SNARE coiled-coil homology domain-containing protein.	0.980
TCAL_10335	TCAL_17156	A0A553NCQ3	A0A553P4I1	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.916
TCAL_10691	TCAL_03071	A0A553P009	A0A553NV95	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.841