28 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_05562	Uncharacterized protein. (608 aa)
	TCAL_08320	Aa_trans domain-containing protein. (332 aa)
	TCAL_13114	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (434 aa)
	TCAL_13116	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (651 aa)
	TCAL_05074	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (704 aa)
	TCAL_14604	Uncharacterized protein. (630 aa)
	TCAL_01296	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (530 aa)
	TCAL_07357	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (339 aa)
	TCAL_04712	C2 domain-containing protein. (391 aa)
	TCAL_11888	Aa_trans domain-containing protein. (468 aa)
	TCAL_05193	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (678 aa)
	TCAL_02366	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (703 aa)
	TCAL_04384	Aa_trans domain-containing protein. (463 aa)
	TCAL_00418	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (377 aa)
	TCAL_10335	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (605 aa)
	TCAL_07711	Uncharacterized protein. (429 aa)
	TCAL_10758	V-SNARE coiled-coil homology domain-containing protein. (156 aa)
	TCAL_16389	Uncharacterized protein. (453 aa)
	TCAL_10691	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (298 aa)
	TCAL_12113	Uncharacterized protein. (1560 aa)
	TCAL_03876	Uncharacterized protein. (433 aa)
	TCAL_16226	Uncharacterized protein. (638 aa)
	TCAL_17156	Uncharacterized protein. (459 aa)
	TCAL_04885	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (662 aa)
	TCAL_05086	t-SNARE coiled-coil homology domain-containing protein. (661 aa)
	TCAL_03071	Uncharacterized protein. (204 aa)
	TCAL_04117	Methyltransf_25 domain-containing protein. (281 aa)
	TCAL_04170	Uncharacterized protein. (508 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00418	TCAL_03071	A0A553NAZ6	A0A553NV95	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.841
TCAL_00418	TCAL_04117	A0A553NAZ6	A0A553NU60	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Methyltransf_25 domain-containing protein.	0.574
TCAL_00418	TCAL_04384	A0A553NAZ6	A0A553N9M4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Aa_trans domain-containing protein.	0.518
TCAL_00418	TCAL_04712	A0A553NAZ6	A0A553PRT5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	C2 domain-containing protein.	0.673
TCAL_00418	TCAL_05562	A0A553NAZ6	A0A553P6T6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.673
TCAL_00418	TCAL_07711	A0A553NAZ6	A0A553ND99	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.673
TCAL_00418	TCAL_10335	A0A553NAZ6	A0A553NCQ3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.933
TCAL_00418	TCAL_10758	A0A553NAZ6	A0A553NTD9	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.938
TCAL_00418	TCAL_12113	A0A553NAZ6	A0A553P2H5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.622
TCAL_00418	TCAL_14604	A0A553NAZ6	A0A553PDC4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.574
TCAL_00418	TCAL_16226	A0A553NAZ6	A0A553P4C5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.977
TCAL_00418	TCAL_16389	A0A553NAZ6	A0A553NZS0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.673
TCAL_00418	TCAL_17156	A0A553NAZ6	A0A553P4I1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.841
TCAL_01296	TCAL_04170	A0A553PDN4	A0A553NU31	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.932
TCAL_01296	TCAL_05074	A0A553PDN4	A0A553NTV6	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.970
TCAL_03071	TCAL_00418	A0A553NV95	A0A553NAZ6	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.841
TCAL_03071	TCAL_04117	A0A553NV95	A0A553NU60	Uncharacterized protein.	Methyltransf_25 domain-containing protein.	0.701
TCAL_03071	TCAL_04170	A0A553NV95	A0A553NU31	Uncharacterized protein.	Uncharacterized protein.	0.539
TCAL_03071	TCAL_04384	A0A553NV95	A0A553N9M4	Uncharacterized protein.	Aa_trans domain-containing protein.	0.689
TCAL_03071	TCAL_04712	A0A553NV95	A0A553PRT5	Uncharacterized protein.	C2 domain-containing protein.	0.790