27 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_02129	Uncharacterized protein. (446 aa)
	TCAL_12828	Uncharacterized protein. (524 aa)
	TCAL_11715	Uncharacterized protein. (502 aa)
	TCAL_11716	Uncharacterized protein. (485 aa)
	TCAL_13734	Uncharacterized protein. (398 aa)
	TCAL_12827	Uncharacterized protein. (497 aa)
	TCAL_05178	Ig-like domain-containing protein. (205 aa)
	TCAL_03099	Uncharacterized protein. (400 aa)
	TCAL_07226	Uncharacterized protein. (449 aa)
	TCAL_06422	Uncharacterized protein. (433 aa)
	TCAL_03447	Uncharacterized protein. (1320 aa)
	TCAL_10467	Uncharacterized protein. (860 aa)
	TCAL_06652	Peptidase S72 domain-containing protein. (931 aa)
	TCAL_06351	Ribosomal_S27 domain-containing protein. (94 aa)
	TCAL_13266	Ubiquitin carboxyl-terminal hydrolase. (892 aa)
	TCAL_04520	Uncharacterized protein. (1259 aa)
	TCAL_03867	Uncharacterized protein. (1362 aa)
	TCAL_07594	Uncharacterized protein. (522 aa)
	TCAL_12741	Uncharacterized protein. (1440 aa)
	TCAL_15402	Uncharacterized protein. (467 aa)
	TCAL_08987	Uncharacterized protein. (1201 aa)
	TCAL_12225	Uncharacterized protein. (1030 aa)
	TCAL_12224	Ig-like domain-containing protein. (1020 aa)
	TCAL_10910	Uncharacterized protein. (1022 aa)
	TCAL_04993	Uncharacterized protein. (1614 aa)
	TCAL_13263	Uncharacterized protein. (391 aa)
	TCAL_07786	SWIM-type domain-containing protein. (2009 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_02129	TCAL_03867	A0A553N6P5	A0A553PF84	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03099	TCAL_03867	A0A553NQF3	A0A553PF84	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03447	TCAL_03867	A0A553NQY1	A0A553PF84	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_02129	A0A553PF84	A0A553N6P5	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_03099	A0A553PF84	A0A553NQF3	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_03447	A0A553PF84	A0A553NQY1	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_04993	A0A553PF84	A0A553PLN1	Uncharacterized protein.	Uncharacterized protein.	0.819
TCAL_03867	TCAL_05178	A0A553PF84	A0A553NPG5	Uncharacterized protein.	Ig-like domain-containing protein.	0.474
TCAL_03867	TCAL_06422	A0A553PF84	A0A553NQU3	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_07226	A0A553PF84	A0A553NQK8	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_07594	A0A553PF84	A0A553PG99	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_08987	A0A553PF84	A0A553PL38	Uncharacterized protein.	Uncharacterized protein.	0.819
TCAL_03867	TCAL_10467	A0A553PF84	A0A553NR46	Uncharacterized protein.	Uncharacterized protein.	0.474
TCAL_03867	TCAL_10910	A0A553PF84	A0A553PLK7	Uncharacterized protein.	Uncharacterized protein.	0.819
TCAL_03867	TCAL_12224	A0A553PF84	A0A553PL99	Uncharacterized protein.	Ig-like domain-containing protein.	0.819
TCAL_03867	TCAL_12225	A0A553PF84	A0A553PL65	Uncharacterized protein.	Uncharacterized protein.	0.819
TCAL_03867	TCAL_12741	A0A553PF84	A0A553PJV3	Uncharacterized protein.	Uncharacterized protein.	0.819
TCAL_04520	TCAL_15402	A0A553PD24	A0A553PKZ5	Uncharacterized protein.	Uncharacterized protein.	0.582
TCAL_04993	TCAL_03867	A0A553PLN1	A0A553PF84	Uncharacterized protein.	Uncharacterized protein.	0.819
TCAL_04993	TCAL_13266	A0A553PLN1	A0A553PBC6	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.569