36 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_07862	Uncharacterized protein; Belongs to the MAGUK family. (832 aa)
	TCAL_04235	V-SNARE coiled-coil homology domain-containing protein. (96 aa)
	TCAL_09318	Uncharacterized protein. (989 aa)
	TCAL_07416	Uncharacterized protein. (296 aa)
	TCAL_01660	Uncharacterized protein. (237 aa)
	TCAL_01618	Uncharacterized protein. (225 aa)
	TCAL_00986	POTRA domain-containing protein. (460 aa)
	TCAL_11987	Uncharacterized protein; Belongs to the MAGUK family. (1099 aa)
	TCAL_17139	Ig-like domain-containing protein. (209 aa)
	TCAL_09959	Uncharacterized protein. (212 aa)
	TCAL_06722	Uncharacterized protein. (789 aa)
	TCAL_06727	Uncharacterized protein. (1031 aa)
	TCAL_04760	Uncharacterized protein. (1106 aa)
	TCAL_03969	Uncharacterized protein. (843 aa)
	TCAL_03405	Uncharacterized protein. (975 aa)
	TCAL_11263	Uncharacterized protein. (902 aa)
	TCAL_11266	Uncharacterized protein. (195 aa)
	TCAL_09600	Ig-like domain-containing protein. (171 aa)
	TCAL_09961	Fibronectin type-III domain-containing protein. (436 aa)
	TCAL_09601	Uncharacterized protein. (585 aa)
	TCAL_09960	Ig-like domain-containing protein. (405 aa)
	TCAL_01071	Uncharacterized protein. (975 aa)
	TCAL_00282	Uncharacterized protein. (1184 aa)
	TCAL_09057	Uncharacterized protein. (779 aa)
	TCAL_04738	Uncharacterized protein. (1183 aa)
	TCAL_04736	Uncharacterized protein. (1136 aa)
	TCAL_11940	Uncharacterized protein. (962 aa)
	TCAL_01110	Uncharacterized protein. (945 aa)
	TCAL_12357	RING-type domain-containing protein. (200 aa)
	TCAL_02391	Arm_2 domain-containing protein. (502 aa)
	TCAL_13423	Uncharacterized protein. (181 aa)
	TCAL_05285	PH domain-containing protein. (667 aa)
	TCAL_07812	Uncharacterized protein. (805 aa)
	TCAL_04937	Bac_surface_Ag domain-containing protein. (562 aa)
	TCAL_03996	LEM domain-containing protein. (776 aa)
	TCAL_06295	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (199 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01618	TCAL_04235	A0A553P9S5	A0A553PLY3	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.563
TCAL_01618	TCAL_07862	A0A553P9S5	A0A553N6S0	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.425
TCAL_01618	TCAL_11987	A0A553P9S5	A0A553P4W7	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.425
TCAL_01618	TCAL_13423	A0A553P9S5	A0A553P087	Uncharacterized protein.	Uncharacterized protein.	0.441
TCAL_04235	TCAL_01618	A0A553PLY3	A0A553P9S5	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.563
TCAL_04235	TCAL_06295	A0A553PLY3	A0A553NAQ9	V-SNARE coiled-coil homology domain-containing protein.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.424
TCAL_04235	TCAL_13423	A0A553PLY3	A0A553P087	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.493
TCAL_06295	TCAL_04235	A0A553NAQ9	A0A553PLY3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	V-SNARE coiled-coil homology domain-containing protein.	0.424
TCAL_06295	TCAL_07862	A0A553NAQ9	A0A553N6S0	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Uncharacterized protein; Belongs to the MAGUK family.	0.404
TCAL_06295	TCAL_11987	A0A553NAQ9	A0A553P4W7	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Uncharacterized protein; Belongs to the MAGUK family.	0.404
TCAL_06295	TCAL_13423	A0A553NAQ9	A0A553P087	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Uncharacterized protein.	0.914
TCAL_07862	TCAL_01618	A0A553N6S0	A0A553P9S5	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.425
TCAL_07862	TCAL_06295	A0A553N6S0	A0A553NAQ9	Uncharacterized protein; Belongs to the MAGUK family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.404
TCAL_07862	TCAL_13423	A0A553N6S0	A0A553P087	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.406
TCAL_11987	TCAL_01618	A0A553P4W7	A0A553P9S5	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.425
TCAL_11987	TCAL_06295	A0A553P4W7	A0A553NAQ9	Uncharacterized protein; Belongs to the MAGUK family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.404
TCAL_11987	TCAL_13423	A0A553P4W7	A0A553P087	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.406
TCAL_13423	TCAL_01618	A0A553P087	A0A553P9S5	Uncharacterized protein.	Uncharacterized protein.	0.441
TCAL_13423	TCAL_04235	A0A553P087	A0A553PLY3	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.493
TCAL_13423	TCAL_06295	A0A553P087	A0A553NAQ9	Uncharacterized protein.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.914