76 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_10763	Uncharacterized protein. (656 aa)
	TCAL_01462	Anion exchange protein. (1164 aa)
	TCAL_02135	Uncharacterized protein. (344 aa)
	TCAL_08399	Uncharacterized protein. (490 aa)
	TCAL_14998	CRAL-TRIO domain-containing protein. (224 aa)
	TCAL_01479	Uncharacterized protein. (647 aa)
	TCAL_10274	Uncharacterized protein. (516 aa)
	TCAL_09266	Anion exchange protein. (1140 aa)
	TCAL_14095	Rho-GAP domain-containing protein. (192 aa)
	TCAL_08400	Uncharacterized protein. (373 aa)
	TCAL_08402	Uncharacterized protein. (428 aa)
	TCAL_06295	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (199 aa)
	TCAL_03996	LEM domain-containing protein. (776 aa)
	TCAL_00468	Uncharacterized protein. (1110 aa)
	TCAL_07965	Rho-GAP domain-containing protein. (706 aa)
	TCAL_08192	Uncharacterized protein. (573 aa)
	TCAL_12585	Sema domain-containing protein. (1648 aa)
	TCAL_10826	Uncharacterized protein. (931 aa)
	TCAL_11665	Uncharacterized protein. (825 aa)
	TCAL_14289	Uncharacterized protein. (658 aa)
	TCAL_11728	Uncharacterized protein. (224 aa)
	TCAL_04287	IF rod domain-containing protein; Belongs to the intermediate filament family. (460 aa)
	TCAL_08900	Sema domain-containing protein. (1934 aa)
	TCAL_12897	L-type lectin-like domain-containing protein. (533 aa)
	TCAL_05064	Rho-GAP domain-containing protein. (1302 aa)
	TCAL_02338	Uncharacterized protein. (192 aa)
	TCAL_06110	Anion exchange protein. (1127 aa)
	TCAL_02799	Uncharacterized protein. (1889 aa)
	TCAL_13423	Uncharacterized protein. (181 aa)
	TCAL_06534	Uncharacterized protein. (904 aa)
	TCAL_01110	Uncharacterized protein. (945 aa)
	TCAL_11940	Uncharacterized protein. (962 aa)
	TCAL_03126	Non-specific serine/threonine protein kinase. (744 aa)
	TCAL_04736	Uncharacterized protein. (1136 aa)
	TCAL_04738	Uncharacterized protein. (1183 aa)
	TCAL_09057	Uncharacterized protein. (779 aa)
	TCAL_00282	Uncharacterized protein. (1184 aa)
	TCAL_05305	Anion exchange protein. (1102 aa)
	TCAL_01071	Uncharacterized protein. (975 aa)
	TCAL_05306	Uncharacterized protein. (1016 aa)
	TCAL_09960	Ig-like domain-containing protein. (405 aa)
	TCAL_09601	Uncharacterized protein. (585 aa)
	TCAL_09961	Fibronectin type-III domain-containing protein. (436 aa)
	TCAL_09600	Ig-like domain-containing protein. (171 aa)
	TCAL_11266	Uncharacterized protein. (195 aa)
	TCAL_11263	Uncharacterized protein. (902 aa)
	TCAL_03405	Uncharacterized protein. (975 aa)
	TCAL_03969	Uncharacterized protein. (843 aa)
	TCAL_04760	Uncharacterized protein. (1106 aa)
	TCAL_06727	Uncharacterized protein. (1031 aa)
	TCAL_06722	Uncharacterized protein. (789 aa)
	TCAL_09959	Uncharacterized protein. (212 aa)
	TCAL_17139	Ig-like domain-containing protein. (209 aa)
	TCAL_01911	Uncharacterized protein. (475 aa)
	TCAL_09169	Uncharacterized protein. (1126 aa)
	TCAL_06711	Uncharacterized protein. (975 aa)
	TCAL_01618	Uncharacterized protein. (225 aa)
	TCAL_00621	ZZ-type domain-containing protein. (679 aa)
	TCAL_00661	Uncharacterized protein. (459 aa)
	TCAL_08308	IF rod domain-containing protein; Belongs to the intermediate filament family. (355 aa)
	TCAL_01636	CortBP2 domain-containing protein. (500 aa)
	TCAL_11879	Uncharacterized protein. (804 aa)
	TCAL_11881	Uncharacterized protein. (1789 aa)
	TCAL_12434	Aldolase_II domain-containing protein. (666 aa)
	TCAL_07423	Uncharacterized protein. (531 aa)
	TCAL_10901	Uncharacterized protein. (1611 aa)
	TCAL_06622	Uncharacterized protein. (910 aa)
	TCAL_09318	Uncharacterized protein. (989 aa)
	TCAL_07186	SMP-LTD domain-containing protein. (684 aa)
	TCAL_08980	Uncharacterized protein. (755 aa)
	TCAL_07165	Uncharacterized protein. (703 aa)
	TCAL_04235	V-SNARE coiled-coil homology domain-containing protein. (96 aa)
	TCAL_01743	Vang-like protein. (594 aa)
	TCAL_06593	Uncharacterized protein. (196 aa)
	TCAL_06782	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (122 aa)
	TCAL_11632	Uncharacterized protein. (495 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00468	TCAL_01479	A0A553NB79	A0A553N814	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_01636	A0A553NB79	A0A553PDG0	Uncharacterized protein.	CortBP2 domain-containing protein.	0.422
TCAL_00468	TCAL_02338	A0A553NB79	A0A553NX04	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_06593	A0A553NB79	A0A553PN50	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_06782	A0A553NB79	A0A553PP61	Uncharacterized protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.628
TCAL_00468	TCAL_07423	A0A553NB79	A0A553PID6	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_08399	A0A553NB79	A0A553N6X4	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_08400	A0A553NB79	A0A553N9A2	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_08402	A0A553NB79	A0A553N9C8	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_11728	A0A553NB79	A0A553NFX6	Uncharacterized protein.	Uncharacterized protein.	0.420
TCAL_00468	TCAL_12897	A0A553NB79	A0A553NTR5	Uncharacterized protein.	L-type lectin-like domain-containing protein.	0.724
TCAL_00621	TCAL_11665	A0A553PBR0	A0A553NDM2	ZZ-type domain-containing protein.	Uncharacterized protein.	0.450
TCAL_00661	TCAL_01479	A0A553PBV1	A0A553N814	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_00661	TCAL_01743	A0A553PBV1	A0A553PM81	Uncharacterized protein.	Vang-like protein.	0.524
TCAL_00661	TCAL_01911	A0A553PBV1	A0A553P6K1	Uncharacterized protein.	Uncharacterized protein.	0.432
TCAL_00661	TCAL_02338	A0A553PBV1	A0A553NX04	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_00661	TCAL_03126	A0A553PBV1	A0A553P1S9	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.573
TCAL_00661	TCAL_06593	A0A553PBV1	A0A553PN50	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_00661	TCAL_07165	A0A553PBV1	A0A553PLG4	Uncharacterized protein.	Uncharacterized protein.	0.524
TCAL_00661	TCAL_07423	A0A553PBV1	A0A553PID6	Uncharacterized protein.	Uncharacterized protein.	0.524