15 items (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCAL_08835	Uncharacterized protein. (529 aa)
	TCAL_13360	Uncharacterized protein. (394 aa)
	TCAL_07693	Uncharacterized protein. (111 aa)
	TCAL_13189	GST C-terminal domain-containing protein. (419 aa)
	TCAL_08083	Formyl_trans_N domain-containing protein. (232 aa)
	TCAL_00967	Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...] (403 aa)
	TCAL_00576	PNPLA domain-containing protein. (580 aa)
	TCAL_10433	Uncharacterized protein. (279 aa)
	TCAL_04503	SHMT domain-containing protein. (491 aa)
	TCAL_01748	Uncharacterized protein. (562 aa)
	TCAL_02133	Uncharacterized protein. (919 aa)
	TCAL_10627	Queuine tRNA-ribosyltransferase accessory subunit 2; Non-catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine); Belongs to the queuine tRNA-ribosyltransferase family. QTRT2 subfamily. (380 aa)
	TCAL_11459	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1252 aa)
	TCAL_07977	Uncharacterized protein. (251 aa)
	TCAL_09253	SHMT domain-containing protein. (478 aa)

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00967	TCAL_04503	A0A553P628	A0A553PD86	Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...]	SHMT domain-containing protein.	0.499
TCAL_00967	TCAL_09253	A0A553P628	A0A553N8I7	Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...]	SHMT domain-containing protein.	0.499
TCAL_00967	TCAL_10627	A0A553P628	A0A553PGZ5	Queuine tRNA-ribosyltransferase catalytic subunit 1; Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, formi [...]	Queuine tRNA-ribosyltransferase accessory subunit 2; Non-catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2- cyclopenten-1-yl)amino)methyl)-7-deazaguanosine); Belongs to the queuine tRNA-ribosyltransferase family. QTRT2 subfamily.	0.988
TCAL_01748	TCAL_02133	A0A553PM74	A0A553N672	Uncharacterized protein.	Uncharacterized protein.	0.890
TCAL_01748	TCAL_04503	A0A553PM74	A0A553PD86	Uncharacterized protein.	SHMT domain-containing protein.	0.715
TCAL_01748	TCAL_07977	A0A553PM74	A0A553N8A5	Uncharacterized protein.	Uncharacterized protein.	0.858
TCAL_01748	TCAL_08835	A0A553PM74	A0A553PQA4	Uncharacterized protein.	Uncharacterized protein.	0.797
TCAL_01748	TCAL_09253	A0A553PM74	A0A553N8I7	Uncharacterized protein.	SHMT domain-containing protein.	0.715
TCAL_01748	TCAL_11459	A0A553PM74	A0A553PLH7	Uncharacterized protein.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.875
TCAL_02133	TCAL_01748	A0A553N672	A0A553PM74	Uncharacterized protein.	Uncharacterized protein.	0.890
TCAL_02133	TCAL_04503	A0A553N672	A0A553PD86	Uncharacterized protein.	SHMT domain-containing protein.	0.985
TCAL_02133	TCAL_07693	A0A553N672	A0A553NET2	Uncharacterized protein.	Uncharacterized protein.	0.975
TCAL_02133	TCAL_07977	A0A553N672	A0A553N8A5	Uncharacterized protein.	Uncharacterized protein.	0.977
TCAL_02133	TCAL_08083	A0A553N672	A0A553NU05	Uncharacterized protein.	Formyl_trans_N domain-containing protein.	0.926
TCAL_02133	TCAL_08835	A0A553N672	A0A553PQA4	Uncharacterized protein.	Uncharacterized protein.	0.977
TCAL_02133	TCAL_09253	A0A553N672	A0A553N8I7	Uncharacterized protein.	SHMT domain-containing protein.	0.985
TCAL_02133	TCAL_10433	A0A553N672	A0A553PBY3	Uncharacterized protein.	Uncharacterized protein.	0.870
TCAL_02133	TCAL_11459	A0A553N672	A0A553PLH7	Uncharacterized protein.	Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.973
TCAL_02133	TCAL_13189	A0A553N672	A0A553NTD8	Uncharacterized protein.	GST C-terminal domain-containing protein.	0.762
TCAL_02133	TCAL_13360	A0A553N672	A0A553PQC3	Uncharacterized protein.	Uncharacterized protein.	0.870