(9 nodes) Organic acid binding network (Microbotryum lychnidisdioicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MVLG_02716	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (164 aa)
	MVLG_00583	Glycine dehydrogenase subunit 2. (1085 aa)
	MVLG_04773	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (512 aa)
	MVLG_04993	Fe2OG dioxygenase domain-containing protein. (605 aa)
	MVLG_05112	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (417 aa)
	MVLG_05225	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (553 aa)
	MVLG_06118	Protein pyrABCN. (2375 aa)
	MVLG_04204	P4Hc domain-containing protein. (241 aa)
	ALA1	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family. (953 aa)

Your Current Organism:

Microbotryum lychnidisdioicae

NCBI taxonomy Id: 683840
Other names: M. lychnidis-dioicae p1A1 Lamole, Microbotryum lychnidis-dioicae p1A1 Lamole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALA1	MVLG_04773	U5H8H2	U5HC86	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.418
MVLG_00583	MVLG_02716	U5GZI1	U5H609	Glycine dehydrogenase subunit 2.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.997
MVLG_00583	MVLG_04773	U5GZI1	U5HC86	Glycine dehydrogenase subunit 2.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.991
MVLG_00583	MVLG_05225	U5GZI1	U5HDL4	Glycine dehydrogenase subunit 2.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.727
MVLG_02716	MVLG_00583	U5H609	U5GZI1	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Glycine dehydrogenase subunit 2.	0.997
MVLG_02716	MVLG_04773	U5H609	U5HC86	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.979
MVLG_02716	MVLG_05112	U5H609	U5HD96	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.477
MVLG_02716	MVLG_05225	U5H609	U5HDL4	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.825
MVLG_04773	ALA1	U5HC86	U5H8H2	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.	0.418
MVLG_04773	MVLG_00583	U5HC86	U5GZI1	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Glycine dehydrogenase subunit 2.	0.991
MVLG_04773	MVLG_02716	U5HC86	U5H609	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.979
MVLG_04773	MVLG_05225	U5HC86	U5HDL4	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.712
MVLG_04773	MVLG_06118	U5HC86	U5HGA6	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	Protein pyrABCN.	0.581
MVLG_05112	MVLG_02716	U5HD96	U5H609	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.477
MVLG_05112	MVLG_06118	U5HD96	U5HGA6	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	Protein pyrABCN.	0.953
MVLG_05225	MVLG_00583	U5HDL4	U5GZI1	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Glycine dehydrogenase subunit 2.	0.727
MVLG_05225	MVLG_02716	U5HDL4	U5H609	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.825
MVLG_05225	MVLG_04773	U5HDL4	U5HC86	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.712
MVLG_06118	MVLG_04773	U5HGA6	U5HC86	Protein pyrABCN.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.581
MVLG_06118	MVLG_05112	U5HGA6	U5HD96	Protein pyrABCN.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.953