(38 nodes) Pyridoxal phosphate-dependent transferase network (Microbotryum lychnidisdioicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MVLG_00561	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (534 aa)
	MVLG_00583	Glycine dehydrogenase subunit 2. (1085 aa)
	MVLG_00613	Aminotransferase, classes I and II. (472 aa)
	MVLG_01009	Aminotran_1_2 domain-containing protein. (551 aa)
	MVLG_01103	Aminotransferase. (434 aa)
	MVLG_01259	cobW domain-containing protein. (494 aa)
	MVLG_01773	Aminotran_5 domain-containing protein. (420 aa)
	MVLG_01814	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (519 aa)
	MVLG_01825	Aspartate aminotransferase. (429 aa)
	MVLG_02320	Alanine-glyoxylate transaminase. (386 aa)
	MVLG_02454	Uncharacterized protein. (628 aa)
	MVLG_02944	Histidinol-phosphate aminotransferase. (410 aa)
	MVLG_03051	Uncharacterized protein. (499 aa)
	MVLG_03455	GHMP_kinases_N domain-containing protein. (892 aa)
	MVLG_03887	Aminotran_1_2 domain-containing protein. (408 aa)
	MVLG_03921	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (630 aa)
	MVLG_04159	Cysteine desulfurase. (501 aa)
	MVLG_04223	O-acetylhomoserine (Thiol)-lyase. (433 aa)
	MVLG_04259	Beta_elim_lyase domain-containing protein. (393 aa)
	MVLG_04384	Uncharacterized protein. (810 aa)
	MVLG_04385	Aminotran_1_2 domain-containing protein. (485 aa)
	MVLG_04444	Aspartate aminotransferase. (440 aa)
	MVLG_04643	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)
	MVLG_04732	Ornithine aminotransferase. (455 aa)
	MVLG_04762	Glutamate decarboxylase; Belongs to the group II decarboxylase family. (551 aa)
	MVLG_04773	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (512 aa)
	MVLG_04839	4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (516 aa)
	MVLG_05042	Aminotran_1_2 domain-containing protein. (582 aa)
	MVLG_05289	Aminotran_1_2 domain-containing protein. (679 aa)
	MVLG_06037	MOSC domain-containing protein. (867 aa)
	BNA5	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family. (493 aa)
	MVLG_06370	Aminotran_1_2 domain-containing protein. (582 aa)
	MVLG_06396	Aminotran_1_2 domain-containing protein. (466 aa)
	MVLG_06454	Uncharacterized protein. (506 aa)
	MVLG_06938	Uncharacterized protein. (553 aa)
	MVLG_06960	Uncharacterized protein. (732 aa)
	MVLG_00089	Aminotran_1_2 domain-containing protein. (460 aa)
	MVLG_00124	Uncharacterized protein. (504 aa)

Your Current Organism:

Microbotryum lychnidisdioicae

NCBI taxonomy Id: 683840
Other names: M. lychnidis-dioicae p1A1 Lamole, Microbotryum lychnidis-dioicae p1A1 Lamole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNA5	MVLG_00089	U5HGB3	U5GY16	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotran_1_2 domain-containing protein.	0.647
BNA5	MVLG_00613	U5HGB3	U5GZL3	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotransferase, classes I and II.	0.679
BNA5	MVLG_01103	U5HGB3	U5H140	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotransferase.	0.942
BNA5	MVLG_03887	U5HGB3	U5H9J8	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotran_1_2 domain-containing protein.	0.679
BNA5	MVLG_05042	U5HGB3	U5HD22	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotran_1_2 domain-containing protein.	0.659
BNA5	MVLG_06370	U5HGB3	U5HH29	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotran_1_2 domain-containing protein.	0.647
BNA5	MVLG_06396	U5HGB3	U5HH56	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	Aminotran_1_2 domain-containing protein.	0.659
MVLG_00089	BNA5	U5GY16	U5HGB3	Aminotran_1_2 domain-containing protein.	Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively; Belongs to the kynureninase family.	0.647
MVLG_00089	MVLG_00583	U5GY16	U5GZI1	Aminotran_1_2 domain-containing protein.	Glycine dehydrogenase subunit 2.	0.400
MVLG_00089	MVLG_00613	U5GY16	U5GZL3	Aminotran_1_2 domain-containing protein.	Aminotransferase, classes I and II.	0.513
MVLG_00089	MVLG_01103	U5GY16	U5H140	Aminotran_1_2 domain-containing protein.	Aminotransferase.	0.680
MVLG_00089	MVLG_01825	U5GY16	U5H3A2	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.684
MVLG_00089	MVLG_02944	U5GY16	U5H6P6	Aminotran_1_2 domain-containing protein.	Histidinol-phosphate aminotransferase.	0.571
MVLG_00089	MVLG_03051	U5GY16	U5H711	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.749
MVLG_00089	MVLG_03887	U5GY16	U5H9J8	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.513
MVLG_00089	MVLG_04444	U5GY16	U5HB89	Aminotran_1_2 domain-containing protein.	Aspartate aminotransferase.	0.682
MVLG_00089	MVLG_05042	U5GY16	U5HD22	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.411
MVLG_00089	MVLG_06370	U5GY16	U5HH29	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.757
MVLG_00089	MVLG_06396	U5GY16	U5HH56	Aminotran_1_2 domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.411
MVLG_00124	MVLG_01825	U5GY53	U5H3A2	Uncharacterized protein.	Aspartate aminotransferase.	0.438