(17 nodes) INO80-type complex network (Wickerhamomyces anomalus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1E3NX14	Uncharacterized protein; Belongs to the actin family. (416 aa)
	A0A1E3P0R2	Bromo domain-containing protein. (479 aa)
	A0A1E3P122	Uncharacterized protein; Belongs to the actin family. (740 aa)
	A0A1E3P2P6	SANT_DAMP1_like domain-containing protein. (483 aa)
	A0A1E3P2T6	Uncharacterized protein. (162 aa)
	A0A1E3P3S6	YL1_C domain-containing protein. (124 aa)
	A0A1E3PBJ0	NET domain-containing protein. (244 aa)
	A0A1E3PA91	HIT-type domain-containing protein. (212 aa)
	A0A1E3P9T0	PAPA-1 domain-containing protein. (366 aa)
	A0A1E3P8X2	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (480 aa)
	A0A1E3P813	Uncharacterized protein. (1577 aa)
	A0A1E3PBN4	Uncharacterized protein. (212 aa)
	A0A1E3P4Y2	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (624 aa)
	A0A1E3P4Y3	Uncharacterized protein. (1232 aa)
	A0A1E3P5U8	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (456 aa)
	A0A1E3P7P8	Uncharacterized protein. (152 aa)
	A0A1E3NVY6	Uncharacterized protein. (640 aa)

Your Current Organism:

Wickerhamomyces anomalus

NCBI taxonomy Id: 683960
Other names: Pichia anomala NRRL Y-366-8, W. anomalus NRRL Y-366-8, Wickerhamomyces anomalus NRRL Y-366-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E3NVY6	A0A1E3P122	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.726
A0A1E3NVY6	A0A1E3P2T6	Uncharacterized protein.	Uncharacterized protein.	0.577
A0A1E3NVY6	A0A1E3P3S6	Uncharacterized protein.	YL1_C domain-containing protein.	0.635
A0A1E3NVY6	A0A1E3P4Y2	Uncharacterized protein.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.811
A0A1E3NVY6	A0A1E3P4Y3	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A1E3NVY6	A0A1E3P5U8	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.817
A0A1E3NVY6	A0A1E3P8X2	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.811
A0A1E3NVY6	A0A1E3P9T0	Uncharacterized protein.	PAPA-1 domain-containing protein.	0.752
A0A1E3NVY6	A0A1E3PBJ0	Uncharacterized protein.	NET domain-containing protein.	0.418
A0A1E3NX14	A0A1E3P2P6	Uncharacterized protein; Belongs to the actin family.	SANT_DAMP1_like domain-containing protein.	0.846
A0A1E3NX14	A0A1E3P4Y2	Uncharacterized protein; Belongs to the actin family.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.461
A0A1E3NX14	A0A1E3P4Y3	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.468
A0A1E3NX14	A0A1E3P5U8	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.968
A0A1E3NX14	A0A1E3P7P8	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.468
A0A1E3NX14	A0A1E3P813	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.967
A0A1E3NX14	A0A1E3P8X2	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.957
A0A1E3NX14	A0A1E3PA91	Uncharacterized protein; Belongs to the actin family.	HIT-type domain-containing protein.	0.976
A0A1E3NX14	A0A1E3PBJ0	Uncharacterized protein; Belongs to the actin family.	NET domain-containing protein.	0.458
A0A1E3NX14	A0A1E3PBN4	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.764
A0A1E3P0R2	A0A1E3P122	Bromo domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.633