(9 nodes) Bromodomain network (Wickerhamomyces anomalus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1E3P3H0	Uncharacterized protein. (546 aa)
	A0A1E3P4T8	Uncharacterized protein. (1531 aa)
	A0A1E3NVM1	Uncharacterized protein. (530 aa)
	A0A1E3PCF7	Uncharacterized protein. (659 aa)
	A0A1E3P0C1	Bromo domain-containing protein. (1265 aa)
	A0A1E3PCA3	Bromo domain-containing protein. (1051 aa)
	A0A1E3PA12	Uncharacterized protein. (436 aa)
	A0A1E3P0R2	Bromo domain-containing protein. (479 aa)
	A0A1E3P0X3	Uncharacterized protein. (1221 aa)

Your Current Organism:

Wickerhamomyces anomalus

NCBI taxonomy Id: 683960
Other names: Pichia anomala NRRL Y-366-8, W. anomalus NRRL Y-366-8, Wickerhamomyces anomalus NRRL Y-366-8

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E3NVM1	A0A1E3P0X3	Uncharacterized protein.	Uncharacterized protein.	0.967
A0A1E3NVM1	A0A1E3P3H0	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A1E3NVM1	A0A1E3P4T8	Uncharacterized protein.	Uncharacterized protein.	0.927
A0A1E3NVM1	A0A1E3PA12	Uncharacterized protein.	Uncharacterized protein.	0.441
A0A1E3P0C1	A0A1E3P0X3	Bromo domain-containing protein.	Uncharacterized protein.	0.408
A0A1E3P0R2	A0A1E3PA12	Bromo domain-containing protein.	Uncharacterized protein.	0.549
A0A1E3P0R2	A0A1E3PCA3	Bromo domain-containing protein.	Bromo domain-containing protein.	0.538
A0A1E3P0X3	A0A1E3NVM1	Uncharacterized protein.	Uncharacterized protein.	0.967
A0A1E3P0X3	A0A1E3P0C1	Uncharacterized protein.	Bromo domain-containing protein.	0.408
A0A1E3P0X3	A0A1E3P3H0	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A1E3P0X3	A0A1E3P4T8	Uncharacterized protein.	Uncharacterized protein.	0.551
A0A1E3P0X3	A0A1E3PA12	Uncharacterized protein.	Uncharacterized protein.	0.672
A0A1E3P0X3	A0A1E3PCA3	Uncharacterized protein.	Bromo domain-containing protein.	0.411
A0A1E3P0X3	A0A1E3PCF7	Uncharacterized protein.	Uncharacterized protein.	0.507
A0A1E3P3H0	A0A1E3NVM1	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A1E3P3H0	A0A1E3P0X3	Uncharacterized protein.	Uncharacterized protein.	0.976
A0A1E3P3H0	A0A1E3P4T8	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1E3P3H0	A0A1E3PA12	Uncharacterized protein.	Uncharacterized protein.	0.561
A0A1E3P4T8	A0A1E3NVM1	Uncharacterized protein.	Uncharacterized protein.	0.927
A0A1E3P4T8	A0A1E3P0X3	Uncharacterized protein.	Uncharacterized protein.	0.551