8 items (Wickerhamomyces anomalus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1E3PAK3	Uncharacterized protein. (170 aa)
	A0A1E3NUZ4	Uncharacterized protein. (219 aa)
	A0A1E3NVE6	Ubiquitin-like domain-containing protein. (152 aa)
	A0A1E3NWS2	Uncharacterized protein. (205 aa)
	A0A1E3NZ40	Uncharacterized protein. (287 aa)
	A0A1E3NZ92	RING-type domain-containing protein. (121 aa)
	A0A1E3P1U0	Uncharacterized protein. (712 aa)
	A0A1E3P2F7	Uncharacterized protein. (212 aa)

Your Current Organism:

Wickerhamomyces anomalus

NCBI taxonomy Id: 683960
Other names: Pichia anomala NRRL Y-366-8, W. anomalus NRRL Y-366-8, Wickerhamomyces anomalus NRRL Y-366-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E3NUZ4	A0A1E3P2F7	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A1E3NUZ4	A0A1E3PAK3	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A1E3NVE6	A0A1E3NZ92	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.963
A0A1E3NVE6	A0A1E3P1U0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.997
A0A1E3NWS2	A0A1E3NZ40	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A1E3NWS2	A0A1E3PAK3	Uncharacterized protein.	Uncharacterized protein.	0.489
A0A1E3NZ40	A0A1E3NWS2	Uncharacterized protein.	Uncharacterized protein.	0.535
A0A1E3NZ92	A0A1E3NVE6	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.963
A0A1E3NZ92	A0A1E3P1U0	RING-type domain-containing protein.	Uncharacterized protein.	0.963
A0A1E3P1U0	A0A1E3NVE6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
A0A1E3P1U0	A0A1E3NZ92	Uncharacterized protein.	RING-type domain-containing protein.	0.963
A0A1E3P2F7	A0A1E3NUZ4	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A1E3P2F7	A0A1E3PAK3	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A1E3PAK3	A0A1E3NUZ4	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A1E3PAK3	A0A1E3NWS2	Uncharacterized protein.	Uncharacterized protein.	0.489
A0A1E3PAK3	A0A1E3P2F7	Uncharacterized protein.	Uncharacterized protein.	0.949