(6 nodes) Nuclear migration, and Mitosis network (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4NUL6_BATDJ	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (447 aa)
	F4NXV1_BATDJ	Mcp5_PH domain-containing protein. (1036 aa)
	F4P300_BATDJ	Uncharacterized protein. (2205 aa)
	PAC1	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs. (444 aa)
	F4P7V2_BATDJ	Uncharacterized protein. (4559 aa)
	F4PAB4_BATDJ	Uncharacterized protein. (239 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NUL6_BATDJ	F4NXV1_BATDJ	F4NUL6	F4NXV1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Mcp5_PH domain-containing protein.	0.495
F4NUL6_BATDJ	F4P300_BATDJ	F4NUL6	F4P300	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.846
F4NUL6_BATDJ	F4P7V2_BATDJ	F4NUL6	F4P7V2	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.858
F4NUL6_BATDJ	F4PAB4_BATDJ	F4NUL6	F4PAB4	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.743
F4NUL6_BATDJ	PAC1	F4NUL6	F4P3W5	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.	0.540
F4NXV1_BATDJ	F4NUL6_BATDJ	F4NXV1	F4NUL6	Mcp5_PH domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.495
F4NXV1_BATDJ	F4P7V2_BATDJ	F4NXV1	F4P7V2	Mcp5_PH domain-containing protein.	Uncharacterized protein.	0.725
F4NXV1_BATDJ	F4PAB4_BATDJ	F4NXV1	F4PAB4	Mcp5_PH domain-containing protein.	Uncharacterized protein.	0.551
F4NXV1_BATDJ	PAC1	F4NXV1	F4P3W5	Mcp5_PH domain-containing protein.	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.	0.748
F4P300_BATDJ	F4NUL6_BATDJ	F4P300	F4NUL6	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.846
F4P300_BATDJ	F4PAB4_BATDJ	F4P300	F4PAB4	Uncharacterized protein.	Uncharacterized protein.	0.957
F4P300_BATDJ	PAC1	F4P300	F4P3W5	Uncharacterized protein.	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.	0.686
F4P7V2_BATDJ	F4NUL6_BATDJ	F4P7V2	F4NUL6	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.858
F4P7V2_BATDJ	F4NXV1_BATDJ	F4P7V2	F4NXV1	Uncharacterized protein.	Mcp5_PH domain-containing protein.	0.725
F4P7V2_BATDJ	F4PAB4_BATDJ	F4P7V2	F4PAB4	Uncharacterized protein.	Uncharacterized protein.	0.717
F4P7V2_BATDJ	PAC1	F4P7V2	F4P3W5	Uncharacterized protein.	Nuclear distribution protein PAC1; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for nuclear migration during vegetative growth as well as development. Required for retrograde early endosome (EE) transport from the hyphal tip. Required for localization of dynein to the mitotic spindle poles. Recruits additional proteins to the dynein complex at SPBs.	0.978
F4PAB4_BATDJ	F4NUL6_BATDJ	F4PAB4	F4NUL6	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.743
F4PAB4_BATDJ	F4NXV1_BATDJ	F4PAB4	F4NXV1	Uncharacterized protein.	Mcp5_PH domain-containing protein.	0.551
F4PAB4_BATDJ	F4P300_BATDJ	F4PAB4	F4P300	Uncharacterized protein.	Uncharacterized protein.	0.957
F4PAB4_BATDJ	F4P7V2_BATDJ	F4PAB4	F4P7V2	Uncharacterized protein.	Uncharacterized protein.	0.717