7 items (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4PBK5_BATDJ	Uncharacterized protein; Belongs to the protein kinase superfamily. (476 aa)
	F4PBU6_BATDJ	Uncharacterized protein; Belongs to the protein kinase superfamily. (499 aa)
	F4NRN3_BATDJ	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid. (344 aa)
	F4NTV7_BATDJ	cAMP-dependent protein kinase regulatory subunit. (417 aa)
	F4NUT1_BATDJ	Cyclic nucleotide-binding domain-containing protein. (1022 aa)
	F4NUZ1_BATDJ	Uncharacterized protein; Belongs to the protein kinase superfamily. (431 aa)
	F4P3Y0_BATDJ	Cyclic nucleotide-binding domain-containing protein. (892 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NRN3_BATDJ	F4NTV7_BATDJ	F4NRN3	F4NTV7	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	cAMP-dependent protein kinase regulatory subunit.	0.936
F4NRN3_BATDJ	F4NUT1_BATDJ	F4NRN3	F4NUT1	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	Cyclic nucleotide-binding domain-containing protein.	0.785
F4NRN3_BATDJ	F4P3Y0_BATDJ	F4NRN3	F4P3Y0	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	Cyclic nucleotide-binding domain-containing protein.	0.785
F4NTV7_BATDJ	F4NRN3_BATDJ	F4NTV7	F4NRN3	cAMP-dependent protein kinase regulatory subunit.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.936
F4NTV7_BATDJ	F4NUZ1_BATDJ	F4NTV7	F4NUZ1	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.993
F4NTV7_BATDJ	F4PBK5_BATDJ	F4NTV7	F4PBK5	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.986
F4NTV7_BATDJ	F4PBU6_BATDJ	F4NTV7	F4PBU6	cAMP-dependent protein kinase regulatory subunit.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.984
F4NUT1_BATDJ	F4NRN3_BATDJ	F4NUT1	F4NRN3	Cyclic nucleotide-binding domain-containing protein.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.785
F4NUT1_BATDJ	F4NUZ1_BATDJ	F4NUT1	F4NUZ1	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.785
F4NUT1_BATDJ	F4PBK5_BATDJ	F4NUT1	F4PBK5	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.785
F4NUT1_BATDJ	F4PBU6_BATDJ	F4NUT1	F4PBU6	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.785
F4NUZ1_BATDJ	F4NTV7_BATDJ	F4NUZ1	F4NTV7	Uncharacterized protein; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase regulatory subunit.	0.993
F4NUZ1_BATDJ	F4NUT1_BATDJ	F4NUZ1	F4NUT1	Uncharacterized protein; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.785
F4NUZ1_BATDJ	F4P3Y0_BATDJ	F4NUZ1	F4P3Y0	Uncharacterized protein; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.785
F4P3Y0_BATDJ	F4NRN3_BATDJ	F4P3Y0	F4NRN3	Cyclic nucleotide-binding domain-containing protein.	2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.	0.785
F4P3Y0_BATDJ	F4NUZ1_BATDJ	F4P3Y0	F4NUZ1	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.785
F4P3Y0_BATDJ	F4PBK5_BATDJ	F4P3Y0	F4PBK5	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.785
F4P3Y0_BATDJ	F4PBU6_BATDJ	F4P3Y0	F4PBU6	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.785
F4PBK5_BATDJ	F4NTV7_BATDJ	F4PBK5	F4NTV7	Uncharacterized protein; Belongs to the protein kinase superfamily.	cAMP-dependent protein kinase regulatory subunit.	0.986
F4PBK5_BATDJ	F4NUT1_BATDJ	F4PBK5	F4NUT1	Uncharacterized protein; Belongs to the protein kinase superfamily.	Cyclic nucleotide-binding domain-containing protein.	0.785