24 items (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4P8A5_BATDJ	UBIQUITIN_CONJUGAT_2 domain-containing protein. (311 aa)
	F4PFY8_BATDJ	Uncharacterized protein. (327 aa)
	F4PE68_BATDJ	CULLIN_2 domain-containing protein; Belongs to the cullin family. (550 aa)
	F4PDN7_BATDJ	Uncharacterized protein. (259 aa)
	F4PCN2_BATDJ	Uncharacterized protein. (479 aa)
	F4PAX7_BATDJ	CULLIN_2 domain-containing protein; Belongs to the cullin family. (763 aa)
	F4PA42_BATDJ	Uncharacterized protein. (426 aa)
	F4P9G5_BATDJ	Uncharacterized protein. (1124 aa)
	F4P9D3_BATDJ	CULLIN_2 domain-containing protein; Belongs to the cullin family. (792 aa)
	F4P977_BATDJ	RING-type domain-containing protein. (361 aa)
	F4P6V2_BATDJ	Ubiquitin. (76 aa)
	F4P3J2_BATDJ	MPN domain-containing protein. (587 aa)
	F4P187_BATDJ	Polyubiquitin. (305 aa)
	F4NZJ9_BATDJ	CULLIN_2 domain-containing protein; Belongs to the cullin family. (795 aa)
	F4NZF5_BATDJ	UBX domain-containing protein. (442 aa)
	F4NYF6_BATDJ	Uncharacterized protein. (875 aa)
	F4NY74_BATDJ	Ubiquitin-like domain-containing protein. (77 aa)
	F4NRV9_BATDJ	CULLIN_2 domain-containing protein; Belongs to the cullin family. (731 aa)
	F4NSK9_BATDJ	Ubiquitin-like domain-containing protein. (121 aa)
	F4NTG2_BATDJ	Uncharacterized protein. (1015 aa)
	F4NU25_BATDJ	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (142 aa)
	F4NVC6_BATDJ	Uncharacterized protein. (242 aa)
	F4NXB3_BATDJ	Uncharacterized protein. (397 aa)
	F4NY15_BATDJ	Autophagy-related protein. (138 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NRV9_BATDJ	F4NSK9_BATDJ	F4NRV9	F4NSK9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.990
F4NRV9_BATDJ	F4NU25_BATDJ	F4NRV9	F4NU25	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.635
F4NRV9_BATDJ	F4NY74_BATDJ	F4NRV9	F4NY74	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-like domain-containing protein.	0.977
F4NRV9_BATDJ	F4NZF5_BATDJ	F4NRV9	F4NZF5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBX domain-containing protein.	0.428
F4NRV9_BATDJ	F4NZJ9_BATDJ	F4NRV9	F4NZJ9	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.492
F4NRV9_BATDJ	F4P187_BATDJ	F4NRV9	F4P187	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Polyubiquitin.	0.772
F4NRV9_BATDJ	F4P8A5_BATDJ	F4NRV9	F4P8A5	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.625
F4NRV9_BATDJ	F4P9D3_BATDJ	F4NRV9	F4P9D3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.725
F4NRV9_BATDJ	F4PAX7_BATDJ	F4NRV9	F4PAX7	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.748
F4NSK9_BATDJ	F4NRV9_BATDJ	F4NSK9	F4NRV9	Ubiquitin-like domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.990
F4NSK9_BATDJ	F4NU25_BATDJ	F4NSK9	F4NU25	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.552
F4NSK9_BATDJ	F4NY74_BATDJ	F4NSK9	F4NY74	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.967
F4NSK9_BATDJ	F4P187_BATDJ	F4NSK9	F4P187	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.713
F4NSK9_BATDJ	F4P6V2_BATDJ	F4NSK9	F4P6V2	Ubiquitin-like domain-containing protein.	Ubiquitin.	0.653
F4NSK9_BATDJ	F4P8A5_BATDJ	F4NSK9	F4P8A5	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.536
F4NSK9_BATDJ	F4P9D3_BATDJ	F4NSK9	F4P9D3	Ubiquitin-like domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.667
F4NSK9_BATDJ	F4PAX7_BATDJ	F4NSK9	F4PAX7	Ubiquitin-like domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.667
F4NSK9_BATDJ	F4PCN2_BATDJ	F4NSK9	F4PCN2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.653
F4NTG2_BATDJ	F4NU25_BATDJ	F4NTG2	F4NU25	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.493
F4NTG2_BATDJ	F4NZJ9_BATDJ	F4NTG2	F4NZJ9	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.900