(7 nodes) Sin3-type complex network (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4PDT8_BATDJ	Uncharacterized protein. (323 aa)
	F4P7G2_BATDJ	Expressed protein. (200 aa)
	F4P6T9_BATDJ	MRG domain-containing protein. (301 aa)
	F4P4M8_BATDJ	Uncharacterized protein. (773 aa)
	F4P1G1_BATDJ	Uncharacterized protein. (297 aa)
	F4P1A5_BATDJ	PG_binding_1 domain-containing protein. (1001 aa)
	F4NTB3_BATDJ	Uncharacterized protein. (755 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NTB3_BATDJ	F4P4M8_BATDJ	F4NTB3	F4P4M8	Uncharacterized protein.	Uncharacterized protein.	0.768
F4P1A5_BATDJ	F4PDT8_BATDJ	F4P1A5	F4PDT8	PG_binding_1 domain-containing protein.	Uncharacterized protein.	0.611
F4P1G1_BATDJ	F4P4M8_BATDJ	F4P1G1	F4P4M8	Uncharacterized protein.	Uncharacterized protein.	0.644
F4P1G1_BATDJ	F4P6T9_BATDJ	F4P1G1	F4P6T9	Uncharacterized protein.	MRG domain-containing protein.	0.598
F4P4M8_BATDJ	F4NTB3_BATDJ	F4P4M8	F4NTB3	Uncharacterized protein.	Uncharacterized protein.	0.768
F4P4M8_BATDJ	F4P1G1_BATDJ	F4P4M8	F4P1G1	Uncharacterized protein.	Uncharacterized protein.	0.644
F4P4M8_BATDJ	F4P6T9_BATDJ	F4P4M8	F4P6T9	Uncharacterized protein.	MRG domain-containing protein.	0.956
F4P4M8_BATDJ	F4P7G2_BATDJ	F4P4M8	F4P7G2	Uncharacterized protein.	Expressed protein.	0.673
F4P6T9_BATDJ	F4P1G1_BATDJ	F4P6T9	F4P1G1	MRG domain-containing protein.	Uncharacterized protein.	0.598
F4P6T9_BATDJ	F4P4M8_BATDJ	F4P6T9	F4P4M8	MRG domain-containing protein.	Uncharacterized protein.	0.956
F4P6T9_BATDJ	F4P7G2_BATDJ	F4P6T9	F4P7G2	MRG domain-containing protein.	Expressed protein.	0.975
F4P7G2_BATDJ	F4P4M8_BATDJ	F4P7G2	F4P4M8	Expressed protein.	Uncharacterized protein.	0.673
F4P7G2_BATDJ	F4P6T9_BATDJ	F4P7G2	F4P6T9	Expressed protein.	MRG domain-containing protein.	0.975
F4PDT8_BATDJ	F4P1A5_BATDJ	F4PDT8	F4P1A5	Uncharacterized protein.	PG_binding_1 domain-containing protein.	0.611