9 items (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4PAH9_BATDJ	Cyclin N-terminal domain-containing protein. (233 aa)
	F4PB75_BATDJ	KxDL domain-containing protein. (119 aa)
	F4PDU8_BATDJ	Homeobox_KN domain-containing protein. (348 aa)
	F4NYK3_BATDJ	SKIP_SNW domain-containing protein. (579 aa)
	F4P179_BATDJ	Uncharacterized protein; Belongs to the cyclin family. (308 aa)
	F4P187_BATDJ	Polyubiquitin. (305 aa)
	F4P3C2_BATDJ	P/Homo B domain-containing protein; Belongs to the peptidase S8 family. (538 aa)
	F4NVC1_BATDJ	Ubiquitin-like domain-containing protein. (182 aa)
	F4P9J5_BATDJ	Protein kinase domain-containing protein. (367 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NVC1_BATDJ	F4P187_BATDJ	F4NVC1	F4P187	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.996
F4NVC1_BATDJ	F4P3C2_BATDJ	F4NVC1	F4P3C2	Ubiquitin-like domain-containing protein.	P/Homo B domain-containing protein; Belongs to the peptidase S8 family.	0.602
F4NVC1_BATDJ	F4PB75_BATDJ	F4NVC1	F4PB75	Ubiquitin-like domain-containing protein.	KxDL domain-containing protein.	0.831
F4P179_BATDJ	F4P9J5_BATDJ	F4P179	F4P9J5	Uncharacterized protein; Belongs to the cyclin family.	Protein kinase domain-containing protein.	0.999
F4P179_BATDJ	F4PAH9_BATDJ	F4P179	F4PAH9	Uncharacterized protein; Belongs to the cyclin family.	Cyclin N-terminal domain-containing protein.	0.643
F4P187_BATDJ	F4NVC1_BATDJ	F4P187	F4NVC1	Polyubiquitin.	Ubiquitin-like domain-containing protein.	0.996
F4P187_BATDJ	F4P3C2_BATDJ	F4P187	F4P3C2	Polyubiquitin.	P/Homo B domain-containing protein; Belongs to the peptidase S8 family.	0.538
F4P187_BATDJ	F4PB75_BATDJ	F4P187	F4PB75	Polyubiquitin.	KxDL domain-containing protein.	0.683
F4P3C2_BATDJ	F4NVC1_BATDJ	F4P3C2	F4NVC1	P/Homo B domain-containing protein; Belongs to the peptidase S8 family.	Ubiquitin-like domain-containing protein.	0.602
F4P3C2_BATDJ	F4P187_BATDJ	F4P3C2	F4P187	P/Homo B domain-containing protein; Belongs to the peptidase S8 family.	Polyubiquitin.	0.538
F4P9J5_BATDJ	F4P179_BATDJ	F4P9J5	F4P179	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.999
F4P9J5_BATDJ	F4PAH9_BATDJ	F4P9J5	F4PAH9	Protein kinase domain-containing protein.	Cyclin N-terminal domain-containing protein.	0.683
F4PAH9_BATDJ	F4P179_BATDJ	F4PAH9	F4P179	Cyclin N-terminal domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.643
F4PAH9_BATDJ	F4P9J5_BATDJ	F4PAH9	F4P9J5	Cyclin N-terminal domain-containing protein.	Protein kinase domain-containing protein.	0.683
F4PB75_BATDJ	F4NVC1_BATDJ	F4PB75	F4NVC1	KxDL domain-containing protein.	Ubiquitin-like domain-containing protein.	0.831
F4PB75_BATDJ	F4P187_BATDJ	F4PB75	F4P187	KxDL domain-containing protein.	Polyubiquitin.	0.683