18 items (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4PB75_BATDJ	KxDL domain-containing protein. (119 aa)
	F4NU25_BATDJ	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (142 aa)
	F4NUF6_BATDJ	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (167 aa)
	F4NVC1_BATDJ	Ubiquitin-like domain-containing protein. (182 aa)
	F4NWQ1_BATDJ	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (304 aa)
	F4NXK9_BATDJ	Uncharacterized protein. (675 aa)
	F4NY50_BATDJ	HORMA domain-containing protein. (222 aa)
	F4NYY5_BATDJ	Uncharacterized protein. (1303 aa)
	F4P187_BATDJ	Polyubiquitin. (305 aa)
	F4P223_BATDJ	ANAPC4 domain-containing protein. (618 aa)
	F4P3Q3_BATDJ	WD_REPEATS_REGION domain-containing protein. (357 aa)
	F4PF35_BATDJ	Uncharacterized protein. (351 aa)
	F4NRT3_BATDJ	WD_REPEATS_REGION domain-containing protein. (336 aa)
	F4P9R8_BATDJ	Uncharacterized protein. (539 aa)
	F4P9G5_BATDJ	Uncharacterized protein. (1124 aa)
	F4P5H5_BATDJ	Uncharacterized protein. (517 aa)
	F4P4I7_BATDJ	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (232 aa)
	F4NRL9_BATDJ	WD_REPEATS_REGION domain-containing protein. (336 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NRL9_BATDJ	F4NRT3_BATDJ	F4NRL9	F4NRT3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.965
F4NRL9_BATDJ	F4NU25_BATDJ	F4NRL9	F4NU25	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.643
F4NRL9_BATDJ	F4NUF6_BATDJ	F4NRL9	F4NUF6	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.744
F4NRL9_BATDJ	F4NVC1_BATDJ	F4NRL9	F4NVC1	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.656
F4NRL9_BATDJ	F4NWQ1_BATDJ	F4NRL9	F4NWQ1	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.630
F4NRL9_BATDJ	F4NY50_BATDJ	F4NRL9	F4NY50	WD_REPEATS_REGION domain-containing protein.	HORMA domain-containing protein.	0.998
F4NRL9_BATDJ	F4NYY5_BATDJ	F4NRL9	F4NYY5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
F4NRL9_BATDJ	F4P187_BATDJ	F4NRL9	F4P187	WD_REPEATS_REGION domain-containing protein.	Polyubiquitin.	0.673
F4NRL9_BATDJ	F4P223_BATDJ	F4NRL9	F4P223	WD_REPEATS_REGION domain-containing protein.	ANAPC4 domain-containing protein.	0.985
F4NRL9_BATDJ	F4P3Q3_BATDJ	F4NRL9	F4P3Q3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.965
F4NRL9_BATDJ	F4P4I7_BATDJ	F4NRL9	F4P4I7	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.722
F4NRL9_BATDJ	F4P5H5_BATDJ	F4NRL9	F4P5H5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.544
F4NRL9_BATDJ	F4P9R8_BATDJ	F4NRL9	F4P9R8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.762
F4NRT3_BATDJ	F4NRL9_BATDJ	F4NRT3	F4NRL9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.965
F4NRT3_BATDJ	F4NU25_BATDJ	F4NRT3	F4NU25	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.671
F4NRT3_BATDJ	F4NUF6_BATDJ	F4NRT3	F4NUF6	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.936
F4NRT3_BATDJ	F4NVC1_BATDJ	F4NRT3	F4NVC1	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.725
F4NRT3_BATDJ	F4NWQ1_BATDJ	F4NRT3	F4NWQ1	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.932
F4NRT3_BATDJ	F4NXK9_BATDJ	F4NRT3	F4NXK9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.909
F4NRT3_BATDJ	F4NY50_BATDJ	F4NRT3	F4NY50	WD_REPEATS_REGION domain-containing protein.	HORMA domain-containing protein.	0.979