16 items (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4PF35_BATDJ	Uncharacterized protein. (351 aa)
	F4PBL0_BATDJ	Uncharacterized protein. (474 aa)
	F4PBJ7_BATDJ	RNA_bind domain-containing protein. (581 aa)
	F4PB75_BATDJ	KxDL domain-containing protein. (119 aa)
	F4PB33_BATDJ	Uncharacterized protein. (319 aa)
	F4NX37_BATDJ	Uncharacterized protein. (906 aa)
	F4P951_BATDJ	Uncharacterized protein. (604 aa)
	F4P5H5_BATDJ	Uncharacterized protein. (517 aa)
	TIF35	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (282 aa)
	F4P187_BATDJ	Polyubiquitin. (305 aa)
	F4P170_BATDJ	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (860 aa)
	F4NZ30_BATDJ	XRN_N domain-containing protein. (738 aa)
	F4NX74_BATDJ	XRN_N domain-containing protein. (870 aa)
	F4NTP5_BATDJ	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (997 aa)
	F4NUP4_BATDJ	Nudix hydrolase domain-containing protein. (225 aa)
	F4NVC1_BATDJ	Ubiquitin-like domain-containing protein. (182 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NTP5_BATDJ	TIF35	F4NTP5	F4P3R4	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.622
F4NUP4_BATDJ	F4NVC1_BATDJ	F4NUP4	F4NVC1	Nudix hydrolase domain-containing protein.	Ubiquitin-like domain-containing protein.	0.526
F4NUP4_BATDJ	F4NX74_BATDJ	F4NUP4	F4NX74	Nudix hydrolase domain-containing protein.	XRN_N domain-containing protein.	0.915
F4NUP4_BATDJ	F4NZ30_BATDJ	F4NUP4	F4NZ30	Nudix hydrolase domain-containing protein.	XRN_N domain-containing protein.	0.915
F4NUP4_BATDJ	F4P187_BATDJ	F4NUP4	F4P187	Nudix hydrolase domain-containing protein.	Polyubiquitin.	0.526
F4NUP4_BATDJ	F4P951_BATDJ	F4NUP4	F4P951	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.616
F4NUP4_BATDJ	F4PB33_BATDJ	F4NUP4	F4PB33	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.816
F4NUP4_BATDJ	F4PBJ7_BATDJ	F4NUP4	F4PBJ7	Nudix hydrolase domain-containing protein.	RNA_bind domain-containing protein.	0.686
F4NUP4_BATDJ	F4PBL0_BATDJ	F4NUP4	F4PBL0	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.686
F4NVC1_BATDJ	F4NUP4_BATDJ	F4NVC1	F4NUP4	Ubiquitin-like domain-containing protein.	Nudix hydrolase domain-containing protein.	0.526
F4NVC1_BATDJ	F4NX74_BATDJ	F4NVC1	F4NX74	Ubiquitin-like domain-containing protein.	XRN_N domain-containing protein.	0.784
F4NVC1_BATDJ	F4NZ30_BATDJ	F4NVC1	F4NZ30	Ubiquitin-like domain-containing protein.	XRN_N domain-containing protein.	0.784
F4NVC1_BATDJ	F4P187_BATDJ	F4NVC1	F4P187	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.996
F4NVC1_BATDJ	F4P5H5_BATDJ	F4NVC1	F4P5H5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.975
F4NVC1_BATDJ	F4PB75_BATDJ	F4NVC1	F4PB75	Ubiquitin-like domain-containing protein.	KxDL domain-containing protein.	0.831
F4NVC1_BATDJ	F4PF35_BATDJ	F4NVC1	F4PF35	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.657
F4NVC1_BATDJ	TIF35	F4NVC1	F4P3R4	Ubiquitin-like domain-containing protein.	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA.	0.908
F4NX37_BATDJ	F4NX74_BATDJ	F4NX37	F4NX74	Uncharacterized protein.	XRN_N domain-containing protein.	0.611
F4NX37_BATDJ	F4NZ30_BATDJ	F4NX37	F4NZ30	Uncharacterized protein.	XRN_N domain-containing protein.	0.611
F4NX37_BATDJ	F4PB33_BATDJ	F4NX37	F4PB33	Uncharacterized protein.	Uncharacterized protein.	0.711