14 items (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4P187_BATDJ	Polyubiquitin. (305 aa)
	F4NRT0_BATDJ	PCI domain-containing protein. (268 aa)
	F4NVC1_BATDJ	Ubiquitin-like domain-containing protein. (182 aa)
	F4NZ28_BATDJ	RING-type domain-containing protein. (140 aa)
	F4NZT2_BATDJ	Uncharacterized protein. (377 aa)
	F4P043_BATDJ	Poly [ADP-ribose] polymerase. (468 aa)
	F4P1K0_BATDJ	Uncharacterized protein. (165 aa)
	F4P2Y8_BATDJ	MPN domain-containing protein. (342 aa)
	F4P305_BATDJ	MPN domain-containing protein. (307 aa)
	F4P4X7_BATDJ	Uncharacterized protein. (268 aa)
	F4P7Z0_BATDJ	PCI domain-containing protein. (444 aa)
	F4P9X1_BATDJ	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (456 aa)
	F4PB75_BATDJ	KxDL domain-containing protein. (119 aa)
	F4PDK6_BATDJ	PCI domain-containing protein. (368 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NRT0_BATDJ	F4NVC1_BATDJ	F4NRT0	F4NVC1	PCI domain-containing protein.	Ubiquitin-like domain-containing protein.	0.743
F4NRT0_BATDJ	F4NZ28_BATDJ	F4NRT0	F4NZ28	PCI domain-containing protein.	RING-type domain-containing protein.	0.871
F4NRT0_BATDJ	F4NZT2_BATDJ	F4NRT0	F4NZT2	PCI domain-containing protein.	Uncharacterized protein.	0.734
F4NRT0_BATDJ	F4P187_BATDJ	F4NRT0	F4P187	PCI domain-containing protein.	Polyubiquitin.	0.737
F4NRT0_BATDJ	F4P2Y8_BATDJ	F4NRT0	F4P2Y8	PCI domain-containing protein.	MPN domain-containing protein.	0.981
F4NRT0_BATDJ	F4P305_BATDJ	F4NRT0	F4P305	PCI domain-containing protein.	MPN domain-containing protein.	0.981
F4NRT0_BATDJ	F4P4X7_BATDJ	F4NRT0	F4P4X7	PCI domain-containing protein.	Uncharacterized protein.	0.579
F4NRT0_BATDJ	F4P7Z0_BATDJ	F4NRT0	F4P7Z0	PCI domain-containing protein.	PCI domain-containing protein.	0.994
F4NRT0_BATDJ	F4P9X1_BATDJ	F4NRT0	F4P9X1	PCI domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.600
F4NRT0_BATDJ	F4PDK6_BATDJ	F4NRT0	F4PDK6	PCI domain-containing protein.	PCI domain-containing protein.	0.999
F4NVC1_BATDJ	F4NRT0_BATDJ	F4NVC1	F4NRT0	Ubiquitin-like domain-containing protein.	PCI domain-containing protein.	0.743
F4NVC1_BATDJ	F4NZ28_BATDJ	F4NVC1	F4NZ28	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.942
F4NVC1_BATDJ	F4NZT2_BATDJ	F4NVC1	F4NZT2	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.941
F4NVC1_BATDJ	F4P043_BATDJ	F4NVC1	F4P043	Ubiquitin-like domain-containing protein.	Poly [ADP-ribose] polymerase.	0.690
F4NVC1_BATDJ	F4P187_BATDJ	F4NVC1	F4P187	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.996
F4NVC1_BATDJ	F4P1K0_BATDJ	F4NVC1	F4P1K0	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.657
F4NVC1_BATDJ	F4P2Y8_BATDJ	F4NVC1	F4P2Y8	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.782
F4NVC1_BATDJ	F4P305_BATDJ	F4NVC1	F4P305	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.782
F4NVC1_BATDJ	F4P4X7_BATDJ	F4NVC1	F4P4X7	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.673
F4NVC1_BATDJ	F4P7Z0_BATDJ	F4NVC1	F4P7Z0	Ubiquitin-like domain-containing protein.	PCI domain-containing protein.	0.759