11 items (Batrachochytrium dendrobatidis JAM81)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F4PF35_BATDJ	Uncharacterized protein. (351 aa)
	F4P651_BATDJ	Uncharacterized protein. (348 aa)
	F4P5H5_BATDJ	Uncharacterized protein. (517 aa)
	F4P1V0_BATDJ	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (325 aa)
	F4PB75_BATDJ	KxDL domain-containing protein. (119 aa)
	F4NZ28_BATDJ	RING-type domain-containing protein. (140 aa)
	F4P187_BATDJ	Polyubiquitin. (305 aa)
	F4NTV1_BATDJ	CDT1 domain-containing protein. (761 aa)
	F4NV73_BATDJ	MCM domain-containing protein; Belongs to the MCM family. (886 aa)
	F4NVC1_BATDJ	Ubiquitin-like domain-containing protein. (182 aa)
	F4PCX6_BATDJ	MCM domain-containing protein; Belongs to the MCM family. (677 aa)

Your Current Organism:

Batrachochytrium dendrobatidis JAM81

NCBI taxonomy Id: 684364
Other names: B. dendrobatidis JAM81

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4NTV1_BATDJ	F4NV73_BATDJ	F4NTV1	F4NV73	CDT1 domain-containing protein.	MCM domain-containing protein; Belongs to the MCM family.	0.976
F4NTV1_BATDJ	F4NVC1_BATDJ	F4NTV1	F4NVC1	CDT1 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.701
F4NTV1_BATDJ	F4NZ28_BATDJ	F4NTV1	F4NZ28	CDT1 domain-containing protein.	RING-type domain-containing protein.	0.441
F4NTV1_BATDJ	F4P187_BATDJ	F4NTV1	F4P187	CDT1 domain-containing protein.	Polyubiquitin.	0.705
F4NTV1_BATDJ	F4P1V0_BATDJ	F4NTV1	F4P1V0	CDT1 domain-containing protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.999
F4NTV1_BATDJ	F4P651_BATDJ	F4NTV1	F4P651	CDT1 domain-containing protein.	Uncharacterized protein.	0.939
F4NTV1_BATDJ	F4PCX6_BATDJ	F4NTV1	F4PCX6	CDT1 domain-containing protein.	MCM domain-containing protein; Belongs to the MCM family.	0.992
F4NV73_BATDJ	F4NTV1_BATDJ	F4NV73	F4NTV1	MCM domain-containing protein; Belongs to the MCM family.	CDT1 domain-containing protein.	0.976
F4NV73_BATDJ	F4NVC1_BATDJ	F4NV73	F4NVC1	MCM domain-containing protein; Belongs to the MCM family.	Ubiquitin-like domain-containing protein.	0.602
F4NV73_BATDJ	F4P187_BATDJ	F4NV73	F4P187	MCM domain-containing protein; Belongs to the MCM family.	Polyubiquitin.	0.551
F4NV73_BATDJ	F4P1V0_BATDJ	F4NV73	F4P1V0	MCM domain-containing protein; Belongs to the MCM family.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.958
F4NV73_BATDJ	F4P651_BATDJ	F4NV73	F4P651	MCM domain-containing protein; Belongs to the MCM family.	Uncharacterized protein.	0.788
F4NV73_BATDJ	F4PCX6_BATDJ	F4NV73	F4PCX6	MCM domain-containing protein; Belongs to the MCM family.	MCM domain-containing protein; Belongs to the MCM family.	0.977
F4NVC1_BATDJ	F4NTV1_BATDJ	F4NVC1	F4NTV1	Ubiquitin-like domain-containing protein.	CDT1 domain-containing protein.	0.701
F4NVC1_BATDJ	F4NV73_BATDJ	F4NVC1	F4NV73	Ubiquitin-like domain-containing protein.	MCM domain-containing protein; Belongs to the MCM family.	0.602
F4NVC1_BATDJ	F4NZ28_BATDJ	F4NVC1	F4NZ28	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.942
F4NVC1_BATDJ	F4P187_BATDJ	F4NVC1	F4P187	Ubiquitin-like domain-containing protein.	Polyubiquitin.	0.996
F4NVC1_BATDJ	F4P1V0_BATDJ	F4NVC1	F4P1V0	Ubiquitin-like domain-containing protein.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.677
F4NVC1_BATDJ	F4P5H5_BATDJ	F4NVC1	F4P5H5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.975
F4NVC1_BATDJ	F4PB75_BATDJ	F4NVC1	F4PB75	Ubiquitin-like domain-containing protein.	KxDL domain-containing protein.	0.831