(23 nodes) SAGA-type complex network (Galerina marginata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067T645	Ubiquitin carboxyl-terminal hydrolase. (534 aa)
	A0A067SG34	Uncharacterized protein. (350 aa)
	A0A067SKX1	Uncharacterized protein. (392 aa)
	A0A067SLG7	N-acetyltransferase domain-containing protein. (382 aa)
	A0A067SSM1	Bromo domain-containing protein. (912 aa)
	A0A067SVZ6	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (571 aa)
	A0A067SW60	Uncharacterized protein. (441 aa)
	A0A067SYK5	Uncharacterized protein. (94 aa)
	A0A067T112	HTH myb-type domain-containing protein. (398 aa)
	A0A067TW22	Uncharacterized protein. (353 aa)
	A0A067TVT2	TFIID_20kDa domain-containing protein. (335 aa)
	A0A067TV31	SGF29 C-terminal domain-containing protein. (329 aa)
	A0A067TMK6	Uncharacterized protein. (269 aa)
	A0A067S763	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (173 aa)
	A0A067S4M2	Uncharacterized protein. (1585 aa)
	A0A067TKE1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3538 aa)
	A0A067TIM8	TAF domain-containing protein. (492 aa)
	A0A067TGL3	Uncharacterized protein. (927 aa)
	A0A067TFU7	Uncharacterized protein. (699 aa)
	A0A067TES7	WD_REPEATS_REGION domain-containing protein. (623 aa)
	A0A067TBP7	SCA7 domain-containing protein. (153 aa)
	A0A067S9Q3	Uncharacterized protein. (960 aa)
	A0A067SDA3	SCA7 domain-containing protein. (363 aa)

Your Current Organism:

Galerina marginata

NCBI taxonomy Id: 685588
Other names: G. marginata CBS 339.88, Galerina marginata CBS 339.88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067S4M2	A0A067S763	Uncharacterized protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.657
A0A067S4M2	A0A067SLG7	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.578
A0A067S4M2	A0A067SSM1	Uncharacterized protein.	Bromo domain-containing protein.	0.641
A0A067S4M2	A0A067SVZ6	Uncharacterized protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.770
A0A067S4M2	A0A067SW60	Uncharacterized protein.	Uncharacterized protein.	0.700
A0A067S4M2	A0A067T112	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.486
A0A067S4M2	A0A067TFU7	Uncharacterized protein.	Uncharacterized protein.	0.864
A0A067S4M2	A0A067TIM8	Uncharacterized protein.	TAF domain-containing protein.	0.725
A0A067S4M2	A0A067TKE1	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.863
A0A067S4M2	A0A067TMK6	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A067S4M2	A0A067TV31	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.855
A0A067S4M2	A0A067TVT2	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.613
A0A067S4M2	A0A067TW22	Uncharacterized protein.	Uncharacterized protein.	0.434
A0A067S763	A0A067S4M2	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	Uncharacterized protein.	0.657
A0A067S763	A0A067S9Q3	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	Uncharacterized protein.	0.986
A0A067S763	A0A067SDA3	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	SCA7 domain-containing protein.	0.998
A0A067S763	A0A067SG34	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	Uncharacterized protein.	0.926
A0A067S763	A0A067SKX1	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	Uncharacterized protein.	0.657
A0A067S763	A0A067SSM1	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	Bromo domain-containing protein.	0.996
A0A067S763	A0A067SVZ6	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.992