(4 nodes) Glutathione S-transferase, C-terminal-like network (Methylomicrobium album)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EIC30083.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated. (197 aa)
	EIC28025.1	PFAM: Glutathione S-transferase, N-terminal domain. (216 aa)
	EIC28166.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated. (211 aa)
	EIC30641.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain. (219 aa)

Your Current Organism:

Methylomicrobium album

NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIC28025.1	EIC28166.1	Metal_0158	Metal_0304	PFAM: Glutathione S-transferase, N-terminal domain.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	0.606
EIC28025.1	EIC30083.1	Metal_0158	Metal_2353	PFAM: Glutathione S-transferase, N-terminal domain.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	0.834
EIC28025.1	EIC30641.1	Metal_0158	Metal_2960	PFAM: Glutathione S-transferase, N-terminal domain.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.	0.551
EIC28166.1	EIC28025.1	Metal_0304	Metal_0158	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	PFAM: Glutathione S-transferase, N-terminal domain.	0.606
EIC28166.1	EIC30083.1	Metal_0304	Metal_2353	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	0.649
EIC28166.1	EIC30641.1	Metal_0304	Metal_2960	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.	0.797
EIC30083.1	EIC28025.1	Metal_2353	Metal_0158	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	PFAM: Glutathione S-transferase, N-terminal domain.	0.834
EIC30083.1	EIC28166.1	Metal_2353	Metal_0304	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	0.649
EIC30083.1	EIC30641.1	Metal_2353	Metal_2960	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.	0.817
EIC30641.1	EIC28025.1	Metal_2960	Metal_0158	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.	PFAM: Glutathione S-transferase, N-terminal domain.	0.551
EIC30641.1	EIC28166.1	Metal_2960	Metal_0304	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	0.797
EIC30641.1	EIC30083.1	Metal_2960	Metal_2353	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; manually curated.	0.817