STRINGSTRING
xylA xylA KRT15205.1 KRT15205.1 KRT14836.1 KRT14836.1 KRT14683.1 KRT14683.1 KRT14122.1 KRT14122.1 KRT13957.1 KRT13957.1 araA araA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
xylAXylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (443 aa)
KRT15205.1alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (857 aa)
KRT14836.1alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (653 aa)
KRT14683.1alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
KRT14122.1Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (223 aa)
KRT13957.1Ribulokinase; Catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulokinase family. (566 aa)
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (496 aa)
Your Current Organism:
Pedobacter ginsenosidimutans
NCBI taxonomy Id: 687842
Other names: JCM 16721, KACC 14530, P. ginsenosidimutans, Pedobacter ginsenosidimutans Yang et al. 2013, Pedobacter sp. THG-45, strain THG-45
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